Locus 4246

Sequence ID 2L_DroMel_CAF1
Location 12,124,585 – 12,124,677
Length 92
Max. P 0.672312
window6705

overview

Window 5

Location 12,124,585 – 12,124,677
Length 92
Sequences 4
Columns 92
Reading direction reverse
Mean pairwise identity 83.99
Mean single sequence MFE -20.07
Consensus MFE -11.86
Energy contribution -12.80
Covariance contribution 0.94
Combinations/Pair 1.11
Mean z-score -2.22
Structure conservation index 0.59
SVM decision value 0.29
SVM RNA-class probability 0.672312
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12124585 92 - 22407834
CGUUACUUGUCGCCAGUGCCAAAGUUCUGCCACACUUUUAAUGAACCAUAUAUAUGUGUAUAUAUAUAUAAAUCCACAGACGGGCGGCAAAA
......((((((((.(((.((......)).)))...............(((((((((....)))))))))............)))))))).. ( -21.40)
>DroSec_CAF1 4941 87 - 1
CUUUACUUGUCGCCAGUGCCAAAGUUCUGCCACACUUUUAAUGAACCAUAUAUAUAUGUAUGUAUAUA----UCCACAGACG-GCGGCAAAA
......((((((((.(((.((......)).)))..............(((((((((....))))))))----)........)-))))))).. ( -21.10)
>DroSim_CAF1 4909 87 - 1
CGUUACUUGUCGCCAGUGCCAAAGUUCUGCCACACUUUUAAUGAACCAUAUAUAUAUGUAUGUAUAUA----UCCACAGACG-GCGGCAAAA
......((((((((.(((.((......)).)))..............(((((((((....))))))))----)........)-))))))).. ( -21.10)
>DroEre_CAF1 5207 71 - 1
CGUUACCUGUCGCCAGUGCCAAAGUUCUGCCACACUUUUAAUGAACCAUAUAUUUAUAU--------------------ACG-GCGGCAAGG
.....(((((((((.(((.((......)).))).......(((((.......)))))..--------------------..)-))))).))) ( -16.70)
>consensus
CGUUACUUGUCGCCAGUGCCAAAGUUCUGCCACACUUUUAAUGAACCAUAUAUAUAUGUAUGUAUAUA____UCCACAGACG_GCGGCAAAA
......((((((((.(((.((......)).)))..............((((((....))))))..................).))))))).. (-11.86 = -12.80 +   0.94)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:22 2006