Locus 4237

Sequence ID 2L_DroMel_CAF1
Location 12,116,327 – 12,116,432
Length 105
Max. P 0.972134
window6690

overview

Window 0

Location 12,116,327 – 12,116,432
Length 105
Sequences 4
Columns 118
Reading direction reverse
Mean pairwise identity 88.64
Mean single sequence MFE -20.80
Consensus MFE -19.35
Energy contribution -19.35
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -2.06
Structure conservation index 0.93
SVM decision value 1.69
SVM RNA-class probability 0.972134
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12116327 105 - 22407834
AAAAAACCCUUGGCUAUCUAAUGAUGAUCAUUAGGAGCGGUACUGUAAUCACACAGAAGCCAAACACAAACUCAAACUCCCAGCUCAACCUUAAGCCAGUUCUC-------------C
.........((((((..((((((.....))))))((((((..((((......))))..(.....)..............)).)))).......)))))).....-------------. ( -21.10)
>DroSec_CAF1 18446 105 - 1
AAAAAACCCUUGGCUAUCUAAUGAUGAUCAUUAGGAGCGGUACUGUAAUCACACAGAAGCUAAACUCAAACUCAAACUCCCAGCUGAACCUUAAGCCAGUUCUU-------------C
.........((((((.(((((((.....)))))))...(((.((((......)))).((((....................))))..)))...)))))).....-------------. ( -20.65)
>DroSim_CAF1 18279 105 - 1
AAAAAACCCUUGGCUAUCUAAUGAUGAUCAUUAGGAGCGGUACUGUAAUCACACAGAAGCUAAACUCAAACUCAAACUCCCAGCUGAACCUUAAGCCAGUUCUU-------------C
.........((((((.(((((((.....)))))))...(((.((((......)))).((((....................))))..)))...)))))).....-------------. ( -20.65)
>DroYak_CAF1 18623 112 - 1
AAAAAACCCUUGGCUAUCUAAUGAUGAUCAUUAGGAGCGGUACUGUAAUCACACAGAAGCCAA------ACUCCAACUCCCAGCUGAACCUUAAGCCAGUUCCCCUUUCCCCUUCUUC
.........((((((...(((((.....)))))((((.(((.((((......))))..)))..------.))))...................))))))................... ( -20.80)
>consensus
AAAAAACCCUUGGCUAUCUAAUGAUGAUCAUUAGGAGCGGUACUGUAAUCACACAGAAGCCAAACUCAAACUCAAACUCCCAGCUGAACCUUAAGCCAGUUCUC_____________C
.........((((((.(((((((.....)))))))...(((.((((......)))).(((......................)))..)))...))))))................... (-19.35 = -19.35 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:07 2006