Locus 4236

Sequence ID 2L_DroMel_CAF1
Location 12,115,809 – 12,115,928
Length 119
Max. P 0.740451
window6689

overview

Window 9

Location 12,115,809 – 12,115,928
Length 119
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 95.31
Mean single sequence MFE -30.58
Consensus MFE -26.94
Energy contribution -26.58
Covariance contribution -0.36
Combinations/Pair 1.13
Mean z-score -1.33
Structure conservation index 0.88
SVM decision value 0.45
SVM RNA-class probability 0.740451
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12115809 119 + 22407834
ACAAUGGUCGCACAGCCGCAAA-AAACGCACUCGGAAUUGGAAAACCGGGGAAACCAGAAGGGAGAAGACCGAGAGUGUGGAGAUCAAGGGAGAGAAUGUAGGUUGCACUGGCUUUAAUU
.....(((((..((((((((..-..((((.(((((..((....))((.((....))....)).......))))).)))).....((......))...))).)))))...)))))...... ( -29.10)
>DroSec_CAF1 17909 120 + 1
ACAAUAGUCGCACAGCCGCAAAAAAACGCACUCGGAAUUGGAAAACCGGGGAAACCAGAAGGGAGAAGACCGAGAGUGUGGAGAUCAAGGGAGAGAAUGUAGGUUGCAUUGGCUUUAAUU
.....(((((..((((((((.....((((.(((((..((....))((.((....))....)).......))))).)))).....((......))...))).)))))...)))))...... ( -29.10)
>DroSim_CAF1 17744 119 + 1
ACAAUGGUCGCACAGCCGCAAA-AAACGCACUCGGAAUUGGAAAACCGGGGAAACCAGAAGGGAGAAGACCGAGAGUGUGGAGAUCAAGGGAGAGAAUGUAGGUUGCAUUGGCUUUAAUU
....(((((((......))...-..((((.(((((..((....))((.((....))....)).......))))).))))...)))))..((((..(((((.....)))))..)))).... ( -31.70)
>DroEre_CAF1 18170 119 + 1
ACAAUAGUCGCACAGCCGCAAA-AAACGCACUCGGAGUUUGAAAACCGGGGAAACCAGAAGGGAGAGGACCGAGAGUGUGGAGAUCAAGGGAGGGAAUAUAGGUUGCAUUGGCUUUAAUU
.....(((((..(((((.....-...(((((((...((((.....((.((....))....))....))))...)))))))....((....)).........)))))...)))))...... ( -30.40)
>DroYak_CAF1 18052 119 + 1
ACAAUAGUCGCACAGCCGCAAA-AAACGCACUCGCAGCUGGAAAACCGGGGAAACCAGAAGGGAGAAGGCCGAGAGUGCGGAGAUCAAGGGAGAGAAUGUAGGUUGCAUUGGGUUUAAUU
....(((.(.((((((((((..-...(((((((.(.(((......((.((....))....)).....))).).)))))))....((......))...))).)))))...)).).)))... ( -32.60)
>consensus
ACAAUAGUCGCACAGCCGCAAA_AAACGCACUCGGAAUUGGAAAACCGGGGAAACCAGAAGGGAGAAGACCGAGAGUGUGGAGAUCAAGGGAGAGAAUGUAGGUUGCAUUGGCUUUAAUU
.....(((((..(((((.........(((((((............((.((....))....))...........)))))))....((......)).......)))))...)))))...... (-26.94 = -26.58 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:06 2006