Locus 4232

Sequence ID 2L_DroMel_CAF1
Location 12,111,717 – 12,111,837
Length 120
Max. P 0.737396
window6679

overview

Window 9

Location 12,111,717 – 12,111,837
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 93.33
Mean single sequence MFE -45.43
Consensus MFE -39.76
Energy contribution -39.84
Covariance contribution 0.08
Combinations/Pair 1.11
Mean z-score -1.31
Structure conservation index 0.88
SVM decision value 0.44
SVM RNA-class probability 0.737396
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12111717 120 + 22407834
CUUGGCUCUAAGGGUCAGGAUGUGCACACCACGAACCUGUGCACAGGUCCUCUCACCGGCGGCACCAGCUUUUGCACCUCGGACUCCGGUGGUCCGCUGGUCCAGGGAAACGUUCUAAUC
(((((((.....))))))).((((((((.........))))))))..((((...((((((((.((((((....))...((((...))))))))))))))))...))))............ ( -47.20)
>DroSec_CAF1 13807 120 + 1
CUGGGCACUAAGGGUCAGGAUGUGCACACCACGAACCUGUGCACAGGUCCUCUCACCGGCGGCACCAGCUUUUGCACCUCGGACUCCGGAGGUCCGCUGGUCCAGGGAAACGUUCUAAUC
((((((.....(((..((((((((((((.........))))))))..)))))))..((((((.(((.((....))...((((...)))).)))))))))))))))(....)......... ( -46.80)
>DroSim_CAF1 13649 120 + 1
CUGGGCACUAAGGGUCAGGAUGUGCACACCACGAACCUGUGCACUGGUCCUCUCACCGGCGGCACCAGCUUUUGCACCUCUGACUCCGGUGGUCCGCUGGUCCAGGGAAACGUUCUAAUC
((((((.....(((..((((((((((((.........)))))))..))))))))..((((((.((((((....))....(((....)))))))))))))))))))(....)......... ( -45.50)
>DroEre_CAF1 13965 120 + 1
CUGGGCACUAAGGGUCGGGAUGUGCACACCACAAAUCUCUGCACAGGUCCCCUCACCGGCGGCACCAGCUUUUGCACCUCGGACUCCGGUGGUCCGCUGGUCCAGGGAAAUGUCCUAAUC
((((((.....(((..((((((((((.............))))))..)))))))..((((((.((((((....))...((((...))))))))))))))))))))(((....)))..... ( -44.42)
>DroYak_CAF1 13990 120 + 1
CUAGGCACCAAGGGUCAGGAUGUGCACACCACGAAUCUUUGCACAGGUCCUCUCACUGGCGGCACCAGCUUCUGCACCUCGGAUUCCGGUGGUCCGCUGGUCCAGGGAAAUGUCCUGAUC
............((((((((((((((.............)))))...((((...((..((((.((((((....))...((((...))))))))))))..))...))))...))))))))) ( -43.22)
>consensus
CUGGGCACUAAGGGUCAGGAUGUGCACACCACGAACCUGUGCACAGGUCCUCUCACCGGCGGCACCAGCUUUUGCACCUCGGACUCCGGUGGUCCGCUGGUCCAGGGAAACGUUCUAAUC
...(((.(....))))((((((((((((.........)))))))...((((...((((((((.((((((....))...((((...))))))))))))))))...))))...))))).... (-39.76 = -39.84 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:56 2006