Locus 4230

Sequence ID 2L_DroMel_CAF1
Location 12,109,809 – 12,109,929
Length 120
Max. P 0.655067
window6677

overview

Window 7

Location 12,109,809 – 12,109,929
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 87.78
Mean single sequence MFE -47.61
Consensus MFE -39.24
Energy contribution -39.52
Covariance contribution 0.28
Combinations/Pair 1.21
Mean z-score -1.93
Structure conservation index 0.82
SVM decision value 0.25
SVM RNA-class probability 0.655067
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12109809 120 + 22407834
UGGCACCCAUUACUGUGCCGCCAGCAUUCUGAAUGCCAACUGGCUAGUCACCGCUGCCCACUGCCUGACCAAUAGUAACCAGGUGCUGGGCAGCACCUUGGUGGCCGGAAGCAUCGCGGU
.(((((........)))))((..((.(((((...(((....)))..((((((((((((((..(((((............)))))..)))))))).....)))))))))))))...))... ( -51.60)
>DroPse_CAF1 13208 120 + 1
AGGAACUCACUAUUGUGCCGCCAGCAUCCUGAAUACCAACUGGCUGGUGACGGCCGCCCAUUGCCUGACGAACAGCGCUCAAGUGCUGGGAAGCACUUUAGUCGCAGGAAGCAUUGCAGU
........((((..((((..(((((((..(((.........(((((....))))).......(((((.....))).))))).)))))))...))))..)))).((((......))))... ( -41.40)
>DroSec_CAF1 11930 120 + 1
UGGCACCCACUACUGUGCCGCCAGCAUUCUGAAUGCCAACUGGCUGGUUACCGCCGCCCACUGCCUGACCAAUAGUAACCAGGUCCUGGGCAGCACUCUGGUGGCCGGAAGCAUCGCGUG
.(((((........)))))((..((.((((....(((....))).(((((((((.(((((..(((((............)))))..))))).)).....)))))))))))))...))... ( -46.30)
>DroSim_CAF1 11740 120 + 1
UGGCACCCACUACUGUGCCGCCAGCAUUCUGAAUGCCAACUGGCUGGUUACCGCCGCCCACUGCCUGACCAAUAGUAACCAGGUACUGGGCAGCACCCUGGUGGCCGGAAGCAUCGCGGU
.(((((........)))))((..((.((((....(((....))).(((((((((.(((((.((((((............)))))).))))).)).....)))))))))))))...))... ( -47.80)
>DroEre_CAF1 12141 120 + 1
AGGCACCCACUACUGUGCGGCCAGCAUCCUGAAUGCCAACUGGCUGGUCACCGCUGCCCACUGCCUCACCAACAGUAACCAGGUGCUGGGCAGCACCCUGGUGGCCGGAAGUAUCCAGGU
.(((((((((....))).)).(((....)))..))))..(((((((((((((((((((((..((((..............))))..)))))))).....)))))))))......)))).. ( -49.74)
>DroYak_CAF1 12088 120 + 1
AGGCACCCACUACUGUGCGGCCAGCAUCCUGAAUGUCAACUGGCUGGUCACCGCCGCCCACUGCCUGACCAACAGUAACCAGGUGCUGGGCAGCACACUGGUGGCCGGAAGCAUCGAGGU
.(((...(((((.((((((((((((....((.....))....)))))))......(((((..(((((............)))))..))))).))))).)))))))).............. ( -48.80)
>consensus
AGGCACCCACUACUGUGCCGCCAGCAUCCUGAAUGCCAACUGGCUGGUCACCGCCGCCCACUGCCUGACCAACAGUAACCAGGUGCUGGGCAGCACCCUGGUGGCCGGAAGCAUCGCGGU
.(((...(((....)))..))).((.(((.....(((....))).(((((((((.(((((.((((((............)))))).))))).)).....)))))))))).))........ (-39.24 = -39.52 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:53 2006