Locus 4229

Sequence ID 2L_DroMel_CAF1
Location 12,106,242 – 12,106,362
Length 120
Max. P 0.650043
window6676

overview

Window 6

Location 12,106,242 – 12,106,362
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 82.78
Mean single sequence MFE -38.85
Consensus MFE -24.81
Energy contribution -25.37
Covariance contribution 0.56
Combinations/Pair 1.33
Mean z-score -2.23
Structure conservation index 0.64
SVM decision value 0.24
SVM RNA-class probability 0.650043
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12106242 120 + 22407834
GGAUGCACUGAAGCGUGCCCAUCAGUGCGCCACCAUCCAGUUGGACUUCCAGCUGCCAAUUCGUUUUAAUCUCAGCUACAUCGCCGACGAUGGCGAGAAGAAGAGGCCGGUGAUCAUCCA
(((((((((((.(......).)))))))..((((...(((((((....)))))))..............((((..((...(((((......)))))..))..))))..))))...)))). ( -43.50)
>DroPse_CAF1 8898 120 + 1
GGAUGCAUUGAAGCGGGCACAUCAGUGCGCCACCAUACAAUUGGAUUUCCAGCUACCCAUUCGCUUUAAUCUCAACUACAUUGCCGACGACGGCGAGAAGAAGCGUCCAGUGAUCAUCCA
((((((((((.(((((((((....)))).)).(((......))).......))).......((((((..((((.........((((....)))))))).))))))..)))))..))))). ( -38.80)
>DroGri_CAF1 9035 120 + 1
GGAUGCACUGAAGCGUCCAUUCCAAUGUGCUACGAUACAGUUGGAUUUCCAGCUGCCGAUACGCUUCAAUCUCAACUAUAUUGCCGACGAUGGUGAAAAGAAGCGUCCGGUUAUCAUACA
((((((......))))))...............(((((((((((....)))))))(((..(((((((....(((....(((((....))))).)))...))))))).))).))))..... ( -38.00)
>DroWil_CAF1 7939 120 + 1
GGAUGCUUUAAAACGGGCUCACCAAUGUGCCACUAUUCAGUUAGAUUUUCAACUGCCAAUACGCUUCAAUCUUAACUAUAUUGCAGAUGAUGGAGAAAAGAAGCGUCCAGUGAUUAUUCA
(((((((((....(((((.((....)).)))......(((((.(.....))))))......))((((((((((((.....))).))))..)))))....)))))))))............ ( -26.20)
>DroAna_CAF1 8728 120 + 1
GGAUGCUCUGAAACGCGCUCACCAGUGCGCUACCAUCCAGCUGGACUUCCAGUUGCCCAUUCGCUUCAAUCUCAGCUACAUCGCCGACGAUGGUGAGAAGAAGCGGCCGGUGAUCAUCCA
(((((.((.....((((((....))))))..(((...(((((((....))))))).....(((((((..(((((....(((((....))))).))))).)))))))..))))).))))). ( -48.20)
>DroPer_CAF1 10189 120 + 1
GGAUGCUUUGAAGCGGGCACAUCAGUGCGCCACCAUACAAUUGGAUUUCCAGCUACCCAUUCGCUUUAAUCUCAACUACAUUGCCGACGACGGCGAGAAGAAGCGUCCAGUGAUCAUCCA
((((((((((((((((((((....)))).)).........((((....))))..........))))).............((((((....))))))...)))))))))............ ( -38.40)
>consensus
GGAUGCACUGAAGCGGGCACACCAGUGCGCCACCAUACAGUUGGAUUUCCAGCUGCCCAUUCGCUUCAAUCUCAACUACAUUGCCGACGAUGGCGAGAAGAAGCGUCCAGUGAUCAUCCA
((((((..(((((((.((.((....)).)).......(((((((....)))))))......))))))).......((.(.((((((....))))))).))..))))))............ (-24.81 = -25.37 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:52 2006