Locus 4228

Sequence ID 2L_DroMel_CAF1
Location 12,102,954 – 12,103,059
Length 105
Max. P 0.651360
window6675

overview

Window 5

Location 12,102,954 – 12,103,059
Length 105
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 79.03
Mean single sequence MFE -47.12
Consensus MFE -29.89
Energy contribution -31.12
Covariance contribution 1.23
Combinations/Pair 1.26
Mean z-score -1.49
Structure conservation index 0.63
SVM decision value 0.25
SVM RNA-class probability 0.651360
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12102954 105 - 22407834
UGGCCUCG---AAGGUGCAUCCAAGUCCGGGGGCGGCGCGCAGUGUGUGGGCGUUGCCCCUAACCGCCUCCUCCUCCUGCAACAUGGUCGUCGCGGAGGAGGAUGGCC
.((((...---..((((.......((..(((((((((((.((.....)).))))))))))).))))))(((((((((.((.((......)).))))))))))).)))) ( -54.31)
>DroPse_CAF1 5216 102 - 1
UGGCUUCCAGCAAGAUUCACCCCAGCCCGGGGGCGGCGCGGAGUGUGUGGGCGCUUCCCCUGACGGCAUCCUCAUCAUGCAAUAUGGUGGUGGCGGAGGAG------C
..(((((.................(((((((((.(((((...........))))).))))))..))).((((((((((........))))))).)))))))------) ( -38.40)
>DroGri_CAF1 5918 99 - 1
UGGCCUCCAGCAAGGUACACCCCAGUCCGGGGGCAGCGCGCAGUGUUUGGGCGCUGCCCCUAACGGCCUCCUCGUCUUGCAACAUGG---------AAGAAGAUGGCC
.((((........((.((......))))(((((((((((.(((...))).)))))))))))...)))).((((.((((.(.....).---------)))).)).)).. ( -43.70)
>DroMoj_CAF1 5242 99 - 1
UGGCUUCCAGCAAGGUACACCCCAGCCCAGGGGCAGCGCGCAGUGUAUGGGCGCUGCCCCUGACGGCCUCUUCGUCAUGCAACAUGG---------AGGAAGACGGUC
.((((.((.....))........))))((((((((((((.((.....)).))))))))))))..(((((((((.(((((...)))))---------..))))).)))) ( -48.20)
>DroAna_CAF1 4934 105 - 1
UGGCCUCC---AAGGUGCACCCGAGUCCGGGGGCAGCGCGCAGUGUAUGGGCGCUGCCCCUGACAGCCUCCUCCUCAUGCAACAUGGUAGUGGCAGAGGAGGAUGGCC
..(((...---..)))........(((.(((((((((((.((.....)).)))))))))))))).(((((((((((.(((.((......)).))))))))))).))). ( -59.70)
>DroPer_CAF1 6561 102 - 1
UGGCUUCCAGCAAGAUUCACCCCAGCCCGGGGGCGGCGCGGAGUGUGUGGGCGCUUCCCCUGACGGCAUCCUCAUCAUGCAAUAUGGUGGUGGCGGAGGAG------C
..(((((.................(((((((((.(((((...........))))).))))))..))).((((((((((........))))))).)))))))------) ( -38.40)
>consensus
UGGCCUCCAGCAAGGUACACCCCAGCCCGGGGGCAGCGCGCAGUGUGUGGGCGCUGCCCCUGACGGCCUCCUCAUCAUGCAACAUGGU_GUGGCGGAGGAGGAUGGCC
...(((((................(((((((((((((((.((.....)).))))))))))))..))).......(((((...)))))..........)))))...... (-29.89 = -31.12 +   1.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:51 2006