Locus 4227

Sequence ID 2L_DroMel_CAF1
Location 12,093,703 – 12,093,812
Length 109
Max. P 0.613867
window6674

overview

Window 4

Location 12,093,703 – 12,093,812
Length 109
Sequences 5
Columns 109
Reading direction forward
Mean pairwise identity 93.20
Mean single sequence MFE -31.88
Consensus MFE -29.20
Energy contribution -30.04
Covariance contribution 0.84
Combinations/Pair 1.03
Mean z-score -1.14
Structure conservation index 0.92
SVM decision value 0.16
SVM RNA-class probability 0.613867
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12093703 109 + 22407834
CGCACUAAGAUGUGAGUCAGUGUAGCCACACCUGUUCAGCUGACUGCGGUAUGCACCAGCAGCAGAUGAACGGUCCCACUGAUUGAUUCAGUCAGUCUUUAUUUUUUAC
......(((((.(((((((((.(((....(((.(((((.(((.(((((((....))).))))))).))))))))....))))))))))))....))))).......... ( -34.40)
>DroSec_CAF1 30046 108 + 1
CGCACUAAGAUGCGAGUCAGUGUAGCCACACCUGUUCAGCUGACUGCGGUAU-CACCAGCAGCAGAUGAACGGUCCCACUGAUUGAUUUGGUCGUUCUUUAUUUUUUAC
((.((((((...(.((((((((..(((......(((((.(((.((((((...-..)).))))))).))))))))..))))))))).))))))))............... ( -34.40)
>DroSim_CAF1 30498 108 + 1
CGCACUAAGAUGCGAGUCAGUGUAGCCACACCUGUUCAGCUGACUGCGGUAU-CACCAGCAGCAGAUGAACGGUCCCACUGAUUGAUUUGGUCGGUCUUUAUUUUUUAC
((.((((((...(.((((((((..(((......(((((.(((.((((((...-..)).))))))).))))))))..))))))))).))))))))............... ( -35.10)
>DroEre_CAF1 36439 108 + 1
CGCACUAAGAUGCGAGCCAGUGUAGCCACACCUGUUCAGCGGACUUCGGUAUUCACCAGCAGCAGAUGAACGGUCCCACUGAUUGGUU-AGUCGGUCUUUAUUUUCUAU
((.((((....((.(..(((((..(((.((.(((((..((((((....)).....)).))))))).))...)))..)))))..).)))-)))))............... ( -24.80)
>DroYak_CAF1 32289 108 + 1
CGCACUAAGGUGCGAGUCAGUGUAGCCACACCUGUCCAGCUGACUUCGGGAUUCACCAGCAGCAGAUGAACGGUCCCACUGAUUGAUU-AGUCGGUCUUUAUUUUCUAC
(((((....)))))((((((((..(((.((.((((...((((.(....).......)))).)))).))...)))..))))))))(((.-.....)))............ ( -30.70)
>consensus
CGCACUAAGAUGCGAGUCAGUGUAGCCACACCUGUUCAGCUGACUGCGGUAU_CACCAGCAGCAGAUGAACGGUCCCACUGAUUGAUU_AGUCGGUCUUUAUUUUUUAC
((((......))))((((((((..(((......(((((.(((.((((((......)).))))))).))))))))..))))))))......................... (-29.20 = -30.04 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:50 2006