| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 12,091,028 – 12,091,121 |
| Length | 93 |
| Max. P | 0.867300 |
| Location | 12,091,028 – 12,091,121 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 74.60 |
| Mean single sequence MFE | -24.31 |
| Consensus MFE | -8.77 |
| Energy contribution | -9.86 |
| Covariance contribution | 1.09 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.38 |
| Structure conservation index | 0.36 |
| SVM decision value | 0.85 |
| SVM RNA-class probability | 0.867300 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12091028 93 + 22407834 -------------UCUUGAGCCACCAAAUCGAUUGGGAAACAUAAAACAU------AUAUGUGCUGCAG---UUCACGAUAAAAAAAAAGCAGGGCAUGGCGAAUUGGGAGGCUG -------------.....((((.((((.(((....(....).........------.(((((.((((..---.................)))).))))).))).))))..)))). ( -26.41) >DroSec_CAF1 27460 88 + 1 -------------UCUUGAGCCAAAAAAUCGAUUGGGAAACAUAAAAA--------AUAUGUGCUGUAG---UUCAACAUAA---AAAAGCAGGGCAUGGCGAAUUGGGAGGCUG -------------.....((((...((.(((....(....).......--------.(((((.((((..---((........---))..)))).))))).))).))....)))). ( -18.30) >DroSim_CAF1 27741 98 + 1 -------------UCUUGAGCCACCAAAUCGAUUGGGAAACAUAAAAAAUAUAAAAAUAUGUGCUGCAG---UUCACGAUAAAA-AAAAGCAGGGCAUGGCGAAUUGGGAGGCUG -------------.....((((.((((.(((....(....)................(((((.((((..---............-....)))).))))).))).))))..)))). ( -26.47) >DroEre_CAF1 27800 97 + 1 --UUGCCCAA-AAUUGUGAGACUCCAAAUCGAUUGGGAAACACAAAAA--------A-AUGUGCUGCAG---CUCACGAUAA---AAAGUCAGGGCAUGGCGAAUUGGGAGGCUG --...(((((-.((((((((..(((((.....)))))...((((....--------.-.))))......---))))))))..---...((((.....))))...)))))...... ( -25.30) >DroYak_CAF1 29512 101 + 1 ACUUGCCCAAAAAUUGUGAGACUCCAAAUCGAUCGGGAAACAUAAAAA--------AUAUGUGCUGCAG---UUCACGAUAA---AAAGCCAGGGCAUGGCGAAUUGGGAGGCUG .(((.(((((..((((((((..(((..........))).(((((....--------.))))).......---))))))))..---...((((.....))))...))))))))... ( -24.40) >DroAna_CAF1 29130 103 + 1 --CCUCCCAA-AAAAUUAACAAGUGAAGUUGAAUUUGAAACAUAAAAA--------AUAAGUGCAGAAGCGGGCCAUGAUAAAAAAAAAGCA-AGCAUGGCGAAUUGGGAGGCUG --((((((((-........(((((........)))))...........--------.....(((....))).((((((..............-..))))))...))))))))... ( -24.99) >consensus _____________UCUUGAGACACCAAAUCGAUUGGGAAACAUAAAAA________AUAUGUGCUGCAG___UUCACGAUAA___AAAAGCAGGGCAUGGCGAAUUGGGAGGCUG .......................((((.(((....(....)................(((((.(((........................))).))))).))).))))....... ( -8.77 = -9.86 + 1.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:43 2006