| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 12,089,500 – 12,089,593 |
| Length | 93 |
| Max. P | 0.541742 |
| Location | 12,089,500 – 12,089,593 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 75.79 |
| Mean single sequence MFE | -32.16 |
| Consensus MFE | -14.40 |
| Energy contribution | -16.34 |
| Covariance contribution | 1.94 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.45 |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.541742 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12089500 93 + 22407834 UCUG-GGUGGGUCAGGACGAGUCGGGCCAACUCGGAGUCCAUGUCCAGGUAGU----UAUCGAAAAAAUGCUGCGGCUUAACGCAGCCCACGCCCACU ..((-((((((.((((((...(((((....))))).)))).)).)).......----............((((((......))))))...)))))).. ( -36.90) >DroSec_CAF1 25939 93 + 1 UCUG-GGUGGGACAGGCCAAGUCGGGCCAACUCGGAGUCCAGGUCCAGGUAGU----CAUCGAAAAAAUGCUGCGGCUUAACGCAGCCCACGCCCACU ..((-((((.(((.((((......)))).((..(((.......)))..)).))----)...........((((((......))))))...)))))).. ( -36.40) >DroSim_CAF1 26199 93 + 1 UCUG-GGUGGGACAGGCCAAGUCGGGCCAACUCGGAGUCCAUGUCCAGGUAGU----CAUCGAAAAAAUGCUGCGGCUUAACGCAGCCCACGCCCACU ..((-((((.(((.((((......)))).((..(((.......)))..)).))----)...........((((((......))))))...)))))).. ( -36.40) >DroEre_CAF1 26244 93 + 1 UCGG-GGUGGGACUGGUCGAUCCGGGCCAAGGUGGACUCCUUGUCCAGGUAGU----CAUUGAAAAAAUGCUGCGGCUUAACGCAACCCACGCCCACU ..((-((((((.((((.....))))(((....(((((.....))))).((((.----((((.....))))))))))).........))))).)))... ( -39.50) >DroYak_CAF1 27036 83 + 1 UUGGGGGUGUGACAAG-----CCAAGCCAAG------UCCACAUCCAGGUAGU----CAUCGUAAAAAUGCUGCGGCUUAACGCAGCCCACGCCCACU .((((.(((((((..(-----((........------..........))).))----))..........((((((......)))))).))).)))).. ( -26.37) >DroAna_CAF1 27515 78 + 1 -CUG-GAUGGGAUGUGCCAAG-------------AAAUC-----CCAGGUAGCACUGCAAAAAAAAAAUACUGCGGCUUAACACAGCCCACGCCCACC -.((-(.((((((........-------------..)))-----)))....((...(((............)))((((......))))...))))).. ( -17.40) >consensus UCUG_GGUGGGACAGGCCAAGUCGGGCCAACUCGGAGUCCAUGUCCAGGUAGU____CAUCGAAAAAAUGCUGCGGCUUAACGCAGCCCACGCCCACU .....((((((...((.......((((...............)))).......................((((((......))))))))...)))))) (-14.40 = -16.34 + 1.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:41 2006