Locus 4221

Sequence ID 2L_DroMel_CAF1
Location 12,084,587 – 12,084,690
Length 103
Max. P 0.597540
window6664

overview

Window 4

Location 12,084,587 – 12,084,690
Length 103
Sequences 6
Columns 106
Reading direction reverse
Mean pairwise identity 83.01
Mean single sequence MFE -39.60
Consensus MFE -26.37
Energy contribution -26.27
Covariance contribution -0.11
Combinations/Pair 1.36
Mean z-score -1.97
Structure conservation index 0.67
SVM decision value 0.13
SVM RNA-class probability 0.597540
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12084587 103 - 22407834
CCAUUGGACAAUGAUAUGUCUUCUGCCUCUGGAUCUCCGGCGGGUGAUGGCACCAAAGCAUCG---AGUUCCUGCGGCUCCGAUGUCUCAGGUGGCCAUCACAACA
.((..(((((......)))))..))((.((((....)))).))(((((((((((..(((((((---((((.....)))).))))).))..))).)))))))).... ( -41.40)
>DroSec_CAF1 20939 103 - 1
CCAUUGGACAACGAUAUGUCAUCCGCCUCUGGGUCUCCGGCUGGUGAUGGCACCAAAGCAUCG---AGCUCCUGCGGCUCCGAUGUCUCCGGCGGCCAUCAUAACC
......((((......))))....(((.((((....))))..)))((((((.((..(((((((---((((.....)))).))))).))..))..))))))...... ( -34.70)
>DroSim_CAF1 21247 103 - 1
CCACUAGACAACGAUAUGUCCUCUGCCUCUGGAUCUCCGGCUGGUGAUGGCACCAAAGCAUCG---AGUUCCUGCGGCUCCGAUGUCUCCGGUGGCCAUCACAACA
......((((......))))....(((...((....)))))..(((((((((((..(((((((---((((.....)))).))))).))..))).)))))))).... ( -35.20)
>DroEre_CAF1 21080 103 - 1
CCACUGGAUAACGAUUUGUCCUCGGCCUCUGGAUCGCCGGCGGGUGAUGGCACCAAGGCAUCC---AGUUCCUGCGGCUCGGAUGUUUCCGGCGGCCAUCACAACA
.....((((((....))))))..((((.((((((.(((....((((....))))..)))))))---))........((.((((....))))))))))......... ( -41.10)
>DroYak_CAF1 21895 103 - 1
CCACUGGACACCGAUUUGUCCUCUGCCUCUGGAUCUCCAGCUGGUGAUGGCACCAAGGCGUCC---AGUUCCUGCGGCUCGGAUGUCUCCGGCGGCCAUCACAACA
.((..(((((......)))))..))...((((....))))...((((((((.((.((((((((---((((.....)))).))))))))..))..)))))))).... ( -41.20)
>DroAna_CAF1 22601 106 - 1
CCUCUGGACAACGAGCAGUCCUCCGGAUCGGGAUCCCCCCCGGGUCCUACCACCAAGACUUCGGCCAGCUCCUGUGGCUCGGAUGUCUCUGGUGGCGGUCAUCACA
.....((((........))))....(((((((((((.....))))))..((((((((((((((((((.(....))))).)))).)))).)))))))))))...... ( -44.00)
>consensus
CCACUGGACAACGAUAUGUCCUCUGCCUCUGGAUCUCCGGCGGGUGAUGGCACCAAAGCAUCG___AGUUCCUGCGGCUCCGAUGUCUCCGGCGGCCAUCACAACA
.....(((((......))))).......((((....))))...((((((((..(...((((((...((((.....)))).)))))).....)..)))))))).... (-26.37 = -26.27 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:40 2006