| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 12,063,191 – 12,063,289 |
| Length | 98 |
| Max. P | 0.981940 |
| Location | 12,063,191 – 12,063,289 |
|---|---|
| Length | 98 |
| Sequences | 5 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 78.29 |
| Mean single sequence MFE | -29.40 |
| Consensus MFE | -17.39 |
| Energy contribution | -19.27 |
| Covariance contribution | 1.88 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.46 |
| Structure conservation index | 0.59 |
| SVM decision value | 1.90 |
| SVM RNA-class probability | 0.981940 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12063191 98 + 22407834 GGAGUUGACAGUGCAGGUAAAUUUAGCUAU----AGCCAGAUGUAUCGAUUAUCGAUUAUG------------UAUCGAUUUCAAUGCAACAGGUAACUCCAAUAAUAACGAAC (((((((....((((((((.((((.((...----.)).)))).))))((..((((((....------------.)))))).))..)))).....)))))))............. ( -27.20) >DroSec_CAF1 6662 109 + 1 GGAGUUGGCAGUGCAGGUAAAUUUAGCUAU----AGCCAGAUUUGCUAACAAUCGAUUAUG-UUCGUUAUCGCUAUCGAUUUCAAUGCAACAGGUAACCCCAAUAAAAACUAAC ((.((((.(..(((((((((((((.((...----.)).)))))))))...(((((((..((-........))..)))))))....))))...).)))).))............. ( -26.60) >DroSim_CAF1 6679 109 + 1 GGAGUUGACAGUGCACGUAAAUUUAGCUAU----AGCCAGAUUUGCUAACAAUCGAUUAUG-UUCGUUAUCGCUAUCGAUUUCAAUGCAACAGGUAACUCCAAUAAUAACGAAC (((((((....((((.((((((((.((...----.)).))))))))....(((((((..((-........))..)))))))....)))).....)))))))............. ( -28.80) >DroEre_CAF1 6775 113 + 1 GAAGUUGACAGUGCAGCUGGAUUUAGCUAUAAAUAGCCAGAUUGGCCGAUAAUCGAUUGUUG-GUGUUAUCGCAAUCGAUAGCAGCGCAACAGGUAUCGCAAAUAAUAACGAAA ...((((....(((.((..(.(((.((((....)))).))))..)).((((.....((((((-(((((((((....)))))))).).)))))).))))))).....)))).... ( -30.20) >DroYak_CAF1 6724 113 + 1 GGUGUUGGCAGUGCAG-UAGAUUUAGCUAUAAACAGCCAGAUUUGCUGUCAAUCGAUAAACGUGUGUUAUCGCUAUCGAUGGCACUGCAACAGGUAUCGCAAAUAAUAACGAAU ..(((((.((((((((-(((((((.(((......))).)))))))))....(((((((...(((......)))))))))).)))))))))))...................... ( -34.20) >consensus GGAGUUGACAGUGCAGGUAAAUUUAGCUAU____AGCCAGAUUUGCUGACAAUCGAUUAUG_UGCGUUAUCGCUAUCGAUUUCAAUGCAACAGGUAACGCCAAUAAUAACGAAC (((((((.(..(((((((((((((.(((......))).)))))))))....((((((.................)))))).....))))...).)))))))............. (-17.39 = -19.27 + 1.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:34 2006