Locus 4214

Sequence ID 2L_DroMel_CAF1
Location 12,060,887 – 12,061,007
Length 120
Max. P 0.622240
window6656

overview

Window 6

Location 12,060,887 – 12,061,007
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 76.61
Mean single sequence MFE -40.02
Consensus MFE -22.40
Energy contribution -21.13
Covariance contribution -1.27
Combinations/Pair 1.53
Mean z-score -1.62
Structure conservation index 0.56
SVM decision value 0.18
SVM RNA-class probability 0.622240
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12060887 120 - 22407834
UCUUUAGUCAGUUCUUUGCCCAAGGUCUAUGCUUUGGCCAAUUCAAGCAGUGGAUCAAUCAGGCGUGUUUGCCCAGCAGAGAUUUGCUUAAAUUGAUUAUUUGGUUUUGGCUUGAGAAGC
((((.(((((..(((((((....(((((((((((.((.....))))))).)))))).....((((....))))..))))))).......((((..(....)..))))))))).))))... ( -33.60)
>DroVir_CAF1 7974 120 - 1
UAUUUGGUCAUUUCCUUACCCAGGGCCUGUGCCUUGAGCAGUUCAAGCAGUGGGCCACCGACGCGUGCAUUCCCAGCAAGGAUCUGCUAACGUUGGUCAUCUACUUUUGGCUGGAAAAGC
..........(((((.....((((((....))))))...(((.((((.((((((..(((((((...(((.(((......)))..)))...)))))))..))))))))))))))))))... ( -38.20)
>DroPse_CAF1 7470 120 - 1
UCUUCAGUCAGUUCUUUGGCCAAGGCUUGUGCUUUGGUCAGUUCAAGGAGUGGAUCGGUCGGGCCUGCCUGCCCAGCAAGGAUCUGCUGACAUUAAUAAUUUGGUUCUGGCUGGAAAAGC
..(((((((((..(((((((((((((....))))))))))).......((..((((.((.((((......)))).))...))))..))..............))..)))))))))..... ( -47.40)
>DroGri_CAF1 8445 120 - 1
UCUUUGGUCAGUUCUUUACACAGAGUCUGUGCUUGGAGCAGUUCAAGGAGUGGGCCGUCCAGGCGUGCAUUCCCAGCAAGGAUCUCCUAACGCUGGUCAUCUACUUUUGGCUGGACAAGC
(((((((...(((((...(((((...)))))...)))))...))))))).......((((((.((((.((..(((((.(((....)))...)))))..)).)))....).)))))).... ( -40.00)
>DroAna_CAF1 4487 120 - 1
UGUUCAGCCAGUUCUUUUCGCAAGGCUUGUGUUUUGGCCAAUUUAAGCAAUGGAUCCAUAAGGCGUGUUUACCCAGCCGGGAUCUUCUCACCCUGGUCAUUUGGUUCUGGUUGGAAAAGC
..(((((((((..((...((((.....))))...((((((.....((....((((((....(((.((......))))).)))))).)).....))))))...))..)))))))))..... ( -34.80)
>DroPer_CAF1 7467 120 - 1
UCUUCAGUCAGUUCUUUGGCCAAGGCUUGUGCUUUGGUCAGUUCAAGGAGUGGAUCGGUCAGGCCUGCCUGCCCAGCAAGGAUCUGCUGACAUUAAUAAUUUGGUUCUGGCUGGAAAAGC
..(((((((((..(.(((((((((((....)))))))))))..((((.((((....((.((((....))))))(((((......))))).)))).....)))))..)))))))))..... ( -46.10)
>consensus
UCUUCAGUCAGUUCUUUGCCCAAGGCCUGUGCUUUGGCCAGUUCAAGCAGUGGAUCGAUCAGGCGUGCAUGCCCAGCAAGGAUCUGCUAACAUUGAUCAUUUGGUUCUGGCUGGAAAAGC
..(((((((((.........((((((....))))))(((((.((((..((((((((......((.((......))))...))))))))....))))....))))).)))))))))..... (-22.40 = -21.13 +  -1.27)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:32 2006