Locus 4213

Sequence ID 2L_DroMel_CAF1
Location 12,060,597 – 12,060,717
Length 120
Max. P 0.665545
window6655

overview

Window 5

Location 12,060,597 – 12,060,717
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 75.72
Mean single sequence MFE -43.62
Consensus MFE -24.13
Energy contribution -24.30
Covariance contribution 0.17
Combinations/Pair 1.44
Mean z-score -1.64
Structure conservation index 0.55
SVM decision value 0.28
SVM RNA-class probability 0.665545
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12060597 120 - 22407834
CCUACAAUGCCAUUUCACCGUGGUGGCAGGAAGUUCGGGAACUUCUCUUGGAGAGUAAACAAUUUUCGGGCUUGCUGGUGGCCAUUGUAUGCAAAACGGUAGCGACUAAUUUGUGGCGAA
..(((((((((((.((((....))))(((.(((((((..((((((....)))).(....)..))..))))))).))))))).)))))))(((......)))((.((......)).))... ( -38.00)
>DroVir_CAF1 7690 120 - 1
CCUACAAUGCCAUCUCGCCGUGGUGGCAGCAGGUGCGUGAGCUGCUGCUGGAGAGCAAACACUUCUCCGGCCUGUUAGUCGCCAUUGUCUGCCGUAUGGUGGCCACACAGUUGUGGCGUA
..(((...((((((..((.(((((((((((((((((....)).)).(((((((((.......)))))))))))))).)))))))).))..)....))))).((((((....))))))))) ( -49.80)
>DroGri_CAF1 7921 120 - 1
CUUACAAUGCCAUCUCGCCGUGGUGGCAACAGGUGCGUGAACUGCUGCUGGAGAGCAAACAGUUCUCCGGUCUGUUGGUGGCCAUUGUCUGCAAGACAGUGGCCGUUCAGCUGUGGCACA
.......(((((((.......)))))))....((((....((.(((((((((((((.....))))))))).........((((((((((.....))))))))))...)))).)).)))). ( -54.40)
>DroWil_CAF1 7152 120 - 1
CAUAUAAUGCCAUUUCGCCCUGGUGGCAGGAAGUACGAGAACUACUUUUGGAAAGCAAACAAUUCUCUGGAUUACUCGUGGCAAUUGUCUGUAAGAUUGUGGCCACAGAUUUUUGGAGAA
.......(((((((.......)))))))(((((((.......))))))).............(((((..((...((.(((((....(((.....)))....)))))))...))..))))) ( -31.90)
>DroMoj_CAF1 7536 120 - 1
CCUAUAAAGCCAUUUCGCCUUGGUGGCAACAGGUGCGCGAGCUUCUACUCGAGAGCAAGCAAUUCUCUGGCCUGCUGGUGGCCAUUGUAUGUCGAAUGGUGGCCACACGCCUGUGGCGCG
........(((.....(((.....))).((((((((.((((......)))).)((((.((.........)).)))).((((((((..(.......)..)))))))).))))))))))... ( -46.90)
>DroAna_CAF1 4201 120 - 1
CCUACAAUAAGAUCUCACCCUGGUGGCAGGAGGUGCGCGAGUUGCUCUUGGAAAGCAAGCAGUUCUCGGGACUACUGGUGGCCAUUGUUUGCAAAACAGUGGCCAGUAAUCUUUGGCGUA
..(((..........(((....)))((..(((((.(.((((..(((((((.....)))).))).)))).).....((.(((((((((((.....))))))))))).)))))))..))))) ( -40.70)
>consensus
CCUACAAUGCCAUCUCGCCGUGGUGGCAGCAGGUGCGCGAACUGCUCCUGGAGAGCAAACAAUUCUCCGGCCUGCUGGUGGCCAUUGUCUGCAAAACGGUGGCCACACAUCUGUGGCGAA
.......(((((((.......)))))))(((((((............((.(((((.......))))).)).......(((((((((((.......))))))))))).)))))))...... (-24.13 = -24.30 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:31 2006