| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 12,059,181 – 12,059,271 |
| Length | 90 |
| Max. P | 0.551213 |
| Location | 12,059,181 – 12,059,271 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 72.10 |
| Mean single sequence MFE | -25.50 |
| Consensus MFE | -12.86 |
| Energy contribution | -13.78 |
| Covariance contribution | 0.92 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.56 |
| Structure conservation index | 0.50 |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.551213 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12059181 90 + 22407834 ----UCUGGGAUC--AUAUAUGU-------------------AUGUACAUUCUUACCUGCCGUCGUAGGAUAGGAAGUUUAUCGACCUCCCAACUGUCGGCUAAGGCACAGAUCU ----..(((((.(--(((....)-------------------)))....(((((((((((....))))).))))))...........))))).((((..((....)))))).... ( -22.10) >DroSec_CAF1 2664 86 + 1 ----UCUUGGGUC--AUAUAU-----------------------GUACAUUCUUACCUGCCGUCGUAGGAUAGGAAGUUUAUCGACCUCCCAACUGUCGGCCAAGGCACAGAUCU ----..(((((..--....((-----------------------(.((.(((((((((((....))))).)))))))).)))......)))))((((..((....)))))).... ( -23.20) >DroSim_CAF1 2679 86 + 1 ----UCUUGGGUC--AUAUAU-----------------------GUACAUUCUUACCUGCCGUCGUAGGAUAGGAAGUUUAUCGACCUCCCAACUGUCGGCCAAGGCACAGAUCU ----..(((((..--....((-----------------------(.((.(((((((((((....))))).)))))))).)))......)))))((((..((....)))))).... ( -23.20) >DroEre_CAF1 2750 108 + 1 ----UCUAGGAUC--AC-UAUAUCCUAGUGAUCCCAACACAAAGGCAAAUUCUCACCUGCCGUCGUAGGAUAGGUAAUUUGUCGACCUCCCAACUGUCGGCCAAAGCACAGAUCU ----....(((((--((-((.....))))))))).........((((((((...(((((((......)).)))))))))))))..........((((..((....)))))).... ( -31.10) >DroYak_CAF1 2704 105 + 1 GGGAUCUGGGAUC--ACAUACAU--------UCCAAACAGAAAGGCAAAUUCUUACCUGCCGUCGUAGGAUAGGAAGUUUGUCGACCUCCCAACUGUCGGCCAAAGCACAGAUCU (((((((((((..--........--------)))...))))..(((((((((((((((((....))))).)))).))))))))....))))..((((..((....)))))).... ( -31.10) >DroAna_CAF1 2777 101 + 1 GCCUCCUAGGAUGUAAC-AAUAU--------UUUAAACUCAAAGA-----ACAUACCUGUCGCCUUAGGAUAGGCAGCUUAUCCAACUCCCAGCUGUCGGCAAGAGCGCAAAUCU ((((((((((..(..((-(....--------..............-----.......)))..))))))))..(((((((............)))))))))).............. ( -22.31) >consensus ____UCUAGGAUC__ACAUAUAU___________________AGGUACAUUCUUACCUGCCGUCGUAGGAUAGGAAGUUUAUCGACCUCCCAACUGUCGGCCAAAGCACAGAUCU ........(((((....................................(((((((((((....))))).))))))((((.(((((.........)))))...))))...))))) (-12.86 = -13.78 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:30 2006