| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 12,055,145 – 12,055,245 |
| Length | 100 |
| Max. P | 0.918542 |
| Location | 12,055,145 – 12,055,245 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 79.23 |
| Mean single sequence MFE | -34.68 |
| Consensus MFE | -18.20 |
| Energy contribution | -17.57 |
| Covariance contribution | -0.64 |
| Combinations/Pair | 1.32 |
| Mean z-score | -2.59 |
| Structure conservation index | 0.52 |
| SVM decision value | 1.12 |
| SVM RNA-class probability | 0.918542 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12055145 100 - 22407834 AAUGGAUGCGCCGCGCCGGGUAAU------CCAAAUCCCGCUGAUGGCGAGGAGAAGAUUGUCCUCAAGCGGAAGCUAACACUCAUCAAUGGAGUGGCCAUCAUAG ....((((.(((((.((((..(((------(....((((((.....))).)))...))))..))...(((....))).............)).))))))))).... ( -39.80) >DroSec_CAF1 1473 100 - 1 AAUGGAUGCGCUGCGCCGGGAAAU------CCAAAUCCCGCUGAUGGCGAGGAGAAGAUUGUCCUCAAACGGAAGCUAACACUCCUCAAUGGAGUGGCCAUCAUAG ...((.(((...)))))((((...------.....))))..((((((((((((.(....).)))))...(....)....((((((.....)))))))))))))... ( -37.90) >DroSim_CAF1 1474 94 - 1 AAUGGAUGCGCCGCGCCGGGAAA------------UCCCGCUGAUGGCGAGGAGAGGAUUGUCCUCAAACGGAAGCUAACACUACUCAAUGGAGUGGCCAUCAUUG ....((((.(((((.(((((...------------.)))((.....))(((..((((.....))))...(....).........)))...)).))))))))).... ( -34.60) >DroEre_CAF1 1532 94 - 1 AAUGGAUGCGCUGCCUCGGAAAA------------GGCCGGCGAUGGAGAGGAGAAGAUUGUCCUCAAACGGAAGCUAACACUCAUCAAUGGAGUGGCCAUUAUAG (((((...((((((((......)------------)).))))).(((.(((((.(....).)))))...(....)))).(((((.......))))).))))).... ( -28.50) >DroYak_CAF1 1538 94 - 1 AAUGGAUGCGCCGCCUCGGAGCA------------GAACGGCGAUGGAGAGGAGAAGAUUGUCCUCAAGCGGAAGCUAACACUCAUCAAUGGAGUGGCCAUUAUAG ....((((.(((((..((..((.------------.....))(((((.(((((.(....).))))).(((....))).....)))))..))..))))))))).... ( -33.10) >DroAna_CAF1 1429 106 - 1 AAUGGACGCACUCCAUCCACAAAUGGCAGUAAGGAGCCCUCUCAGGGGGAGGACAAAAUGGUUCUUAAACGGAAACUAACCCUCAUCAAUGGAGUGGCCAUUAUUG (((((.(.((((((((........(((........)))......((((((((((......))))).....(....)...)))))....)))))))))))))).... ( -34.20) >consensus AAUGGAUGCGCCGCGCCGGGAAA____________GCCCGCUGAUGGCGAGGAGAAGAUUGUCCUCAAACGGAAGCUAACACUCAUCAAUGGAGUGGCCAUCAUAG ....((((.(((((.((....................(((....))).(((((........)))))........................)).))))))))).... (-18.20 = -17.57 + -0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:29 2006