Locus 4209

Sequence ID 2L_DroMel_CAF1
Location 12,051,854 – 12,051,961
Length 107
Max. P 0.564357
window6651

overview

Window 1

Location 12,051,854 – 12,051,961
Length 107
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 75.46
Mean single sequence MFE -23.20
Consensus MFE -7.61
Energy contribution -9.53
Covariance contribution 1.92
Combinations/Pair 1.10
Mean z-score -2.26
Structure conservation index 0.33
SVM decision value 0.06
SVM RNA-class probability 0.564357
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12051854 107 - 22407834
UUCCCACAAAAGUUUACUUUUUAUGUCUAUGGUUAGGUGCAACAAUCCGAAUUCCUUUGUUAAAAC---AAUCAGGAAAUAAGUGAAUGCGCU-------UAUAUGGGAACA--AACUA-
((((((.(((((....)))))............((((((((..........(((((((((....))---))..))))).........))))))-------))..))))))..--.....- ( -22.11)
>DroSec_CAF1 6003 107 - 1
UUCCCACUAAAGUUUACUUUUUAUCUCUAUGGUUAGGUGCAACAAUCCGAAUUCCUUUGUUAAUAC---GAUCAGGAAAUAAGUGAAAGCGCU-------UAUAUGGGAACA--AACUA-
((((((.....((((((((...(((.....))).))))).)))........(((((((((....))---))..)))))(((((((....))))-------))).))))))..--.....- ( -23.40)
>DroSim_CAF1 6045 107 - 1
UUCCCGCUAAAGUUUACUUUUUAUCUCUAUGGUUAGGUGCAACAAUCCGAAUUCCUUUGUUAAUAC---GAUCAGGAAAUAAGUGAAAGCGCU-------UAUAUGGGAACA--AACUA-
((((((.....((((((((...(((.....))).))))).)))........(((((((((....))---))..)))))(((((((....))))-------))).))))))..--.....- ( -22.70)
>DroEre_CAF1 6039 107 - 1
UUCCCACUACAGUUUACUUCCGA-CUCUAUGGUCAGGUGCAGCAAUCCGAAUUCCUAUUUUACAC----AAUCAGGAAGUCAUUGAAAGCGCU-------UAUAUGGGAACAAAAACUA-
((((((...............((-((....))))((((((..((((..((.((((((((......----))).))))).))))))...)))))-------)...)))))).........- ( -24.50)
>DroYak_CAF1 6014 93 - 1
UUCCCACUAAAGCUUACUU---A-CUUUA----------CAACAAUCCGAUUUCCUUUUUUAACCA---AAUGAGGAAGCGAUUGAAAGCGCU-------UUUAUGGGAACA--AACUA-
((((((..(((((......---.-.....----------............((((((.(((....)---)).))))))((........)))))-------))..))))))..--.....- ( -21.70)
>DroAna_CAF1 6269 117 - 1
UUCCCACUAAUGUUUAAUUUAUC-UUUUAUGGUUCGAUCAUACAAUACUAAUUCCAUUUUGAACACAAAAAUCGGGAAGUUCUCUAAUGCACUUCCCACUUUAAUGGGAACA--AAAUAU
((((((.(((.((..........-.....((((((((.....................)))))).))......(((((((.(......).))))))))).))).))))))..--...... ( -24.80)
>consensus
UUCCCACUAAAGUUUACUUUUUA_CUCUAUGGUUAGGUGCAACAAUCCGAAUUCCUUUGUUAAAAC___AAUCAGGAAAUAAGUGAAAGCGCU_______UAUAUGGGAACA__AACUA_
((((((..((((....))))...............(((((...........(((((.................)))))..........)))))...........)))))).......... ( -7.61 =  -9.53 +   1.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:27 2006