Locus 4208

Sequence ID 2L_DroMel_CAF1
Location 12,051,602 – 12,051,702
Length 100
Max. P 0.985741
window6650

overview

Window 0

Location 12,051,602 – 12,051,702
Length 100
Sequences 6
Columns 113
Reading direction forward
Mean pairwise identity 72.10
Mean single sequence MFE -28.93
Consensus MFE -17.29
Energy contribution -17.82
Covariance contribution 0.53
Combinations/Pair 1.31
Mean z-score -2.12
Structure conservation index 0.60
SVM decision value 2.02
SVM RNA-class probability 0.985741
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12051602 100 + 22407834
UGCGAAUAUAGUAUCGGCGGAUUUCAUAAGGGGCACUACUCUAGUGGAAACUGCCAUUGAAUACAAUGCUCGUAAGAUUUACAUGUAGAUCUUAACUAU-------------A
......((((((...(((((.((((((.((((......)))).)))))).))))).................(((((((((....))))))))))))))-------------) ( -30.40)
>DroPse_CAF1 5509 99 + 1
UUCCAACAUUGUGGCGGUUGACUUCAUACGAGGCACCACCAUUGUAGAGACAGCCAUUGAUUGGAAUCGUCGCAAGAUUGCACAUUAGAUGGAGUUCAU--------------
.....(((..((((.(((.(.((((....)))))))).))))))).(((....(((((...((.....(((....)))....))...)))))..)))..-------------- ( -25.20)
>DroSim_CAF1 5795 98 + 1
UGCGAAUAUAGUAUCGGCGGAUUUCAUAAGGGGCACUACUCUAGUGGAAACUGCCAUCGAAUACAAUGCUCGUAAGAUUUACAUGUAGAUCUGAACAA---------------
(((((.(((.((((((((((.((((((.((((......)))).)))))).)))))...).)))).))).)))))(((((((....)))))))......--------------- ( -30.40)
>DroEre_CAF1 5769 113 + 1
UGCGAAUAUAGUAUCGGCGGAUUUCAUAAGGGGCACUACCCUUGUGGAAACUGCUAUUGAAUAUAAUGCCCGUAAAAUUUAUAUGUAGAUGGGGAUCCUUUCAAAACCCCUCA
((((..(((.((((((((((.(((((((((((......))))))))))).)))))...).)))).)))..)))).............((.((((............)))))). ( -33.30)
>DroYak_CAF1 5807 99 + 1
UGCGAAUAUAGUAGCGGCGGAUUUCAUAAGGGGCACUACUCUUGUGGAAACGGCUAUUGAGUAUAACGCCCGUAAGAUUUAUAUGUAGAUGGGGGUAAU--------------
........(((((((..((..(((((((((((......))))))))))).)))))))))......((.(((((...((......))..))))).))...-------------- ( -29.10)
>DroPer_CAF1 5509 99 + 1
UUCCAACAUUGUGGCGGUUGACUUCAUACGAGGCACCACCAUUGUAGAGACAGCCAUUGAUUGGAAUCGUCGCAAGAUUGCACAUUAGAUGGAGUUCAU--------------
.....(((..((((.(((.(.((((....)))))))).))))))).(((....(((((...((.....(((....)))....))...)))))..)))..-------------- ( -25.20)
>consensus
UGCGAAUAUAGUAGCGGCGGAUUUCAUAAGGGGCACUACCCUUGUGGAAACUGCCAUUGAAUACAAUGCUCGUAAGAUUUAAAUGUAGAUGGGGAUCAU______________
...............(((((.(((((((((((......))))))))))).))))).......................................................... (-17.29 = -17.82 +   0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:26 2006