Locus 4205

Sequence ID 2L_DroMel_CAF1
Location 12,045,477 – 12,045,582
Length 105
Max. P 0.723321
window6646

overview

Window 6

Location 12,045,477 – 12,045,582
Length 105
Sequences 5
Columns 107
Reading direction reverse
Mean pairwise identity 95.49
Mean single sequence MFE -20.34
Consensus MFE -17.30
Energy contribution -17.14
Covariance contribution -0.16
Combinations/Pair 1.04
Mean z-score -1.44
Structure conservation index 0.85
SVM decision value 0.41
SVM RNA-class probability 0.723321
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12045477 105 - 22407834
UUGCAUUUGUAUUGUGCAUUGGCUUUUCAUGCGGCGCUAAACUUUGUGAACAUUAUAAUAAUUUUAUUUCGCUUAUAAUUUCACAAACACAAAAAAA--GAAAGGCA
.(((((.......)))))...(((((((..((...)).....((((((((.(((((((..............)))))))))))))))..........--))))))). ( -21.14)
>DroSec_CAF1 6600 105 - 1
UUGCAUUUGUAUUGUGCAUUGGCUUUUCAUGCGGCGCUAAACUUUGUGAACAUUAUAAUAAUUUUAUUUCGCUUAUAAUUUCACAAACACAAAAAAA--GAAAGGCA
.(((((.......)))))...(((((((..((...)).....((((((((.(((((((..............)))))))))))))))..........--))))))). ( -21.14)
>DroSim_CAF1 6684 105 - 1
UUGCAUUUGUAUUGUGCAUUGGCUUUUCAUGCGGCGCUAAACUUUGUGAACAUUAUAAUAAUUUUAUUUCGCUUAUAAUUUCACAAACACAAAAAAA--GAAAGGCA
.(((((.......)))))...(((((((..((...)).....((((((((.(((((((..............)))))))))))))))..........--))))))). ( -21.14)
>DroEre_CAF1 6775 107 - 1
UUGCAUUUGUAUUGUGCAUUGGCUUUUCAUGCGGCGCUAAACUUUGUGAACAUUAUAAUAAUUUUAUUUCGCUUAUAAUUUCACAAACACAAAAAAAAAGAAAGGCA
.(((((.......)))))...(((((((..((...)).....((((((((.(((((((..............)))))))))))))))............))))))). ( -21.14)
>DroYak_CAF1 8436 99 - 1
UUGCAUUUGUAUUGUGCAUUGGCUUUUCAUGCGGCGCUAAACUUUGUGAACGUUAUAAUAAUUUUAUUUCGCUUAUAAUUUCACAAACACAAAAAAAAA--------
.....(((((...((((....((.......)).)))).....((((((((.(((((((..............))))))))))))))).)))))......-------- ( -17.14)
>consensus
UUGCAUUUGUAUUGUGCAUUGGCUUUUCAUGCGGCGCUAAACUUUGUGAACAUUAUAAUAAUUUUAUUUCGCUUAUAAUUUCACAAACACAAAAAAA__GAAAGGCA
.....(((((...((((....((.......)).)))).....((((((((.(((((((..............))))))))))))))).))))).............. (-17.30 = -17.14 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:22 2006