Locus 4203

Sequence ID 2L_DroMel_CAF1
Location 12,028,634 – 12,028,735
Length 101
Max. P 0.744595
window6644

overview

Window 4

Location 12,028,634 – 12,028,735
Length 101
Sequences 5
Columns 102
Reading direction reverse
Mean pairwise identity 72.56
Mean single sequence MFE -17.92
Consensus MFE -8.00
Energy contribution -7.76
Covariance contribution -0.24
Combinations/Pair 1.28
Mean z-score -1.82
Structure conservation index 0.45
SVM decision value 0.46
SVM RNA-class probability 0.744595
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12028634 101 - 22407834
-CAUAUAAUUCAUUGGAAAAACAAGCAGAAUACUAAGCUAUAUAACAGAGCUAGUUAGCUAGAACUAGUACAGCUCAAAAGCUAAUUAGUUUUUAUAAUUAC
-......((((.(((......)))...)))).........(((((..(((((((((((((.((.((.....)).))...))))))))))))))))))..... ( -18.30)
>DroSec_CAF1 19835 100 - 1
-AAUAUAAUUCAUUGGAAAAACGAGCGGAAUACUAAGCUAUAUAUCAGAGCUAGUUAGCUAGAACUAGUACAUCUCAAAAGCUAAUUAGUU-UAAUAAUUCU
-......((((.(((......)))...))))................((((((((((((((((.........)))....))))))))))))-)......... ( -17.30)
>DroSim_CAF1 20055 87 - 1
-AAUAUAAUUCAUUGGAAAAACGAGCGGAAUAA-------------AGAGCUAGUUAGCUAGAACUAGUACCGCUCAAAAGCUAAUUAGUU-UAAUAAUUAU
-.....((((.(((((......((((((.((..-------------((..((((....))))..)).)).)))))).....))))).))))-.......... ( -18.20)
>DroEre_CAF1 20458 89 - 1
CCAUAUAACUCGUUGGGAAACCGAGCC------------AUAUAUCAUAUCUUGUUAGGUAGAGCUAGUACUGCCCAAAAGCUAAUUAGUU-CAAUAAUUGC
..((((..(((...((....)))))..------------))))....(((((....)))))((((((((...((......))..)))))))-)......... ( -18.10)
>DroYak_CAF1 20918 80 - 1
--------CGCAUUGGAAAACCAAGCA------------GUAUAUCAGAUAUAGUUGGGUAGAACUAGUACUGCUCCACAGCUAAUUAGUU-U-AUAACUAU
--------.((.((((....)))))).------------...........(((((((....((((((((...(((....)))..)))))))-)-.))))))) ( -17.70)
>consensus
_AAUAUAAUUCAUUGGAAAAACGAGCAGAAUA_______AUAUAUCAGAGCUAGUUAGCUAGAACUAGUACAGCUCAAAAGCUAAUUAGUU_UAAUAAUUAU
............(((......)))...........................((((((.....(((((((...((......))..)))))))....)))))). ( -8.00 =  -7.76 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:20 2006