| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 12,026,266 – 12,026,364 |
| Length | 98 |
| Max. P | 0.682666 |
| Location | 12,026,266 – 12,026,364 |
|---|---|
| Length | 98 |
| Sequences | 4 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 87.33 |
| Mean single sequence MFE | -29.60 |
| Consensus MFE | -23.84 |
| Energy contribution | -24.77 |
| Covariance contribution | 0.94 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.59 |
| Structure conservation index | 0.81 |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.682666 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12026266 98 + 22407834 CUUU----CUGUCUGGGCCAUUCUGUUGGCCAAAGUUUCGGUUUCGUGCAUUCCGGUUCUGCGAGUUCUAAACCGAAGCUUGGCAUCUGUAUACAUAUACGU ....----.((((..(((((......))))).((((((((((((.(...((((((....)).)))).).))))))))))))))))...((((....)))).. ( -30.20) >DroSec_CAF1 17619 98 + 1 CUGC----CUGUCUGGGCCAUUCUGUUGGCCAAAGUUUCGGUUUCGUGCAUUCCGGUUCUGCGAGUUCUAAACCGCAGCUUGGCAUCUGUAUACAUAUACGU .(((----(......(((((......))))).(((((.((((((.(...((((((....)).)))).).)))))).)))))))))...((((....)))).. ( -28.50) >DroSim_CAF1 17792 102 + 1 CUUCCUGUCUGUCUGGGCCAUUCUGUUGGCCAAAGUUUCGGUUUCGUGCAUUCCGGUUCUGCGAGUUCUAAACCGCAGCUUGGCAUCUGUAUACAUAUACGU .........((((..(((((......))))).(((((.((((((.(...((((((....)).)))).).)))))).)))))))))...((((....)))).. ( -25.80) >DroEre_CAF1 18059 94 + 1 CUUC----CAGUCUGGGCCAUUCUUUUGGCCAAUGUUUCGGUUUCGGGCAUUCCGGUUCCGCGAGUUCUGAACUGAAACUGG----CUGCACACAUGCAUGU ....----(((((..(((((......)))))...(((((((((.((((.((((((....)).))))))))))))))))).))----)))............. ( -33.90) >consensus CUUC____CUGUCUGGGCCAUUCUGUUGGCCAAAGUUUCGGUUUCGUGCAUUCCGGUUCUGCGAGUUCUAAACCGAAGCUUGGCAUCUGUAUACAUAUACGU .........((((..(((((......))))).((((((((((((.(...((((((....)).)))).).))))))))))))))))...((((....)))).. (-23.84 = -24.77 + 0.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:19 2006