Locus 42

Sequence ID 2L_DroMel_CAF1
Location 184,146 – 184,260
Length 114
Max. P 0.998997
window61

overview

Window 1

Location 184,146 – 184,260
Length 114
Sequences 5
Columns 114
Reading direction reverse
Mean pairwise identity 100.00
Mean single sequence MFE -47.50
Consensus MFE -47.50
Energy contribution -47.50
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -2.59
Structure conservation index 1.00
SVM decision value 3.32
SVM RNA-class probability 0.998997
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 184146 114 - 22407834
CAUUGCCACUGCCACCAGAACUUUUCAAUUGGGCCGUCGUUGCAGCAGUGGCGGCUUCGUACCAUGACUGUGGUGGAGCCACCCGCGCGCUCUGAUGGUUCUGGUGGAUAUUCU
...........(((((((((((..(((...(((((((.((..(....)..))((((((..(((((....)))))))))))....))).))))))).)))))))))))....... ( -47.50)
>DroSec_CAF1 386 114 - 1
CAUUGCCACUGCCACCAGAACUUUUCAAUUGGGCCGUCGUUGCAGCAGUGGCGGCUUCGUACCAUGACUGUGGUGGAGCCACCCGCGCGCUCUGAUGGUUCUGGUGGAUAUUCU
...........(((((((((((..(((...(((((((.((..(....)..))((((((..(((((....)))))))))))....))).))))))).)))))))))))....... ( -47.50)
>DroSim_CAF1 386 114 - 1
CAUUGCCACUGCCACCAGAACUUUUCAAUUGGGCCGUCGUUGCAGCAGUGGCGGCUUCGUACCAUGACUGUGGUGGAGCCACCCGCGCGCUCUGAUGGUUCUGGUGGAUAUUCU
...........(((((((((((..(((...(((((((.((..(....)..))((((((..(((((....)))))))))))....))).))))))).)))))))))))....... ( -47.50)
>DroEre_CAF1 401 114 - 1
CAUUGCCACUGCCACCAGAACUUUUCAAUUGGGCCGUCGUUGCAGCAGUGGCGGCUUCGUACCAUGACUGUGGUGGAGCCACCCGCGCGCUCUGAUGGUUCUGGUGGAUAUUCU
...........(((((((((((..(((...(((((((.((..(....)..))((((((..(((((....)))))))))))....))).))))))).)))))))))))....... ( -47.50)
>DroYak_CAF1 392 114 - 1
CAUUGCCACUGCCACCAGAACUUUUCAAUUGGGCCGUCGUUGCAGCAGUGGCGGCUUCGUACCAUGACUGUGGUGGAGCCACCCGCGCGCUCUGAUGGUUCUGGUGGAUAUUCU
...........(((((((((((..(((...(((((((.((..(....)..))((((((..(((((....)))))))))))....))).))))))).)))))))))))....... ( -47.50)
>consensus
CAUUGCCACUGCCACCAGAACUUUUCAAUUGGGCCGUCGUUGCAGCAGUGGCGGCUUCGUACCAUGACUGUGGUGGAGCCACCCGCGCGCUCUGAUGGUUCUGGUGGAUAUUCU
...........(((((((((((..(((...(((((((.((..(....)..))((((((..(((((....)))))))))))....))).))))))).)))))))))))....... (-47.50 = -47.50 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:23:59 2006