| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 12,016,490 – 12,016,582 |
| Length | 92 |
| Max. P | 0.627796 |
| Location | 12,016,490 – 12,016,582 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 81.86 |
| Mean single sequence MFE | -27.07 |
| Consensus MFE | -16.27 |
| Energy contribution | -15.88 |
| Covariance contribution | -0.39 |
| Combinations/Pair | 1.30 |
| Mean z-score | -2.07 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.627796 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12016490 92 + 22407834 CGUUUGGAGCAUAGACUGAUGAGUUCGCUGAUGUGGGGAAAGUAUUGCAACAGCAAAAAGUUUUCCCCAUAGAGAGCUAGAAA---GGACAAAGA .((((.((((.((......)).))))(((..(((((((((((..((((....))))....)))))))))))...)))......---))))..... ( -26.20) >DroPse_CAF1 15910 92 + 1 CGCUUGGAGCACAGGCCAAUCAGCUCACUGAUGUGCGGGAAAUACUGCAGAAGGAGAAAGUUUUCCCCAUAGAGAGCUGGAAC---AUACAGACA .(((((.....)))))...(((((((.(((.(.(((((......))))).).(((((....)))))...))).)))))))...---......... ( -29.30) >DroEre_CAF1 8361 92 + 1 CGCUUGGAGCACAGACUAAUGAGUUCGCUGAUGUGGGGGAAGUACUGCAGCAGCAAAAAGUUUUCCCCAUAGAGAGCUAUAAA---GGACACGGA .((((.((((.((......)).)))).....(((((((((((...(((....))).....)))))))))))..))))......---......... ( -24.80) >DroYak_CAF1 8621 92 + 1 CGUUUGGAGCACAGACUAAUGAGUUCGCUGAUGUGCGGGAAGUACUGCAACAGCAGAAAGUUUUCCCCAUAGAGAGCUAUAAG---CGACAAAGA ((((((((((.((......)).))))(((..((((.((((((..((((....)))).....))))))))))...)))..))))---))....... ( -27.80) >DroAna_CAF1 10170 94 + 1 CGCUUGGAGCAGAGAGCGAUCAACUCGCUGAUGUGCGGGAAAUACUGCAGUAGGAGAAAGUUUUCGCCGUAGAGAGCUGGAGGAGAGGAGAAAG- (((((........))))).((..(((.(((...(((((......))))).))).....(((((((......)))))))......)))..))...- ( -25.00) >DroPer_CAF1 15771 92 + 1 CGCUUGGAGCACAGGCCAAUCAGCUCACUGAUGUGCGGGAAAUACUGCAGAAGGAGAAAGUUUUCCCCAUAGAGAGCUGGAAC---AUACAGACA .(((((.....)))))...(((((((.(((.(.(((((......))))).).(((((....)))))...))).)))))))...---......... ( -29.30) >consensus CGCUUGGAGCACAGACCAAUCAGCUCGCUGAUGUGCGGGAAAUACUGCAGCAGCAGAAAGUUUUCCCCAUAGAGAGCUAGAAA___GGACAAAGA .((((.((((.((......)).)))).....((((.((((((.(((............)))))))))))))..)))).................. (-16.27 = -15.88 + -0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:13 2006