Locus 4197

Sequence ID 2L_DroMel_CAF1
Location 12,013,971 – 12,014,068
Length 97
Max. P 0.768434
window6636

overview

Window 6

Location 12,013,971 – 12,014,068
Length 97
Sequences 5
Columns 99
Reading direction reverse
Mean pairwise identity 81.73
Mean single sequence MFE -30.46
Consensus MFE -21.09
Energy contribution -22.62
Covariance contribution 1.53
Combinations/Pair 1.08
Mean z-score -1.86
Structure conservation index 0.69
SVM decision value 0.52
SVM RNA-class probability 0.768434
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12013971 97 - 22407834
--UUCGCAUCGCCUUGAGCUGGGCCAAUGAACCUGCUGGGAGCAGCAGCAAACGCAGCAGCACAGCAGCAACAUCCCAGCAACAACGGACCUUGCAUCC
--...(((..((((((.((((((...(((...((((((...((.((.((....)).)).)).))))))...)))))))))..))).)).)..))).... ( -33.90)
>DroSec_CAF1 5427 97 - 1
--UUCGCAUCGCCUUGAGCUGGGCCAAUGAACCUGCUGGGAGCAGCAGCAAACGCAGCAGCACAGCAGCAACAUCCCAGCAACAACGGACCUUGCAUCC
--...(((..((((((.((((((...(((...((((((...((.((.((....)).)).)).))))))...)))))))))..))).)).)..))).... ( -33.90)
>DroSim_CAF1 5477 97 - 1
--UUCGCAUCGCCUUGAGCUGGGCCAAUGAACCUGCUGGGAGCAGCAGCAAACGCAGCAGCACAGCAGCAACAUCCCAGCAACAACGGACCUUGCAUCC
--...(((..((((((.((((((...(((...((((((...((.((.((....)).)).)).))))))...)))))))))..))).)).)..))).... ( -33.90)
>DroEre_CAF1 5802 86 - 1
--UUCGCAUCGCCUUGAGCUGGGCCAAUGAACCUGCUGGGAGCAGCAGCAAACGCA-----------GCAACAUCCCAGCAACAGCGGACAUUGCAUCC
--(((((...((((......)))).........((((((((...((.((....)).-----------))....))))))))...))))).......... ( -29.60)
>DroAna_CAF1 5739 77 - 1
CGCUCGCCUUGCCUUGAGCCAGGCCAAUGAACUUGCUGGGAGCAACAGCAG---CA---GC----------------AGAAGCAACGGACGAUGCAUCC
.(((((((..((((......))))...((...((((((...((....))..---))---))----------------))...))..)).))).)).... ( -21.00)
>consensus
__UUCGCAUCGCCUUGAGCUGGGCCAAUGAACCUGCUGGGAGCAGCAGCAAACGCAGCAGCACAGCAGCAACAUCCCAGCAACAACGGACCUUGCAUCC
.....(((...(((((.((((((.........((((((....)))))).....((.((......)).)).....))))))..))).))....))).... (-21.09 = -22.62 +   1.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:12 2006