Locus 4191

Sequence ID 2L_DroMel_CAF1
Location 12,005,391 – 12,005,510
Length 119
Max. P 0.994907
window6626

overview

Window 6

Location 12,005,391 – 12,005,510
Length 119
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 89.03
Mean single sequence MFE -41.44
Consensus MFE -35.28
Energy contribution -35.84
Covariance contribution 0.56
Combinations/Pair 1.15
Mean z-score -2.37
Structure conservation index 0.85
SVM decision value 2.52
SVM RNA-class probability 0.994907
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12005391 119 - 22407834
GCAUUUUAGAGCGUCGCCAGUGCCAGGGUCAGUUGAACGUUAACUGGCCCUUUCGUUUGGAGUGUAUUUGGUUCAAGGCUGUUCUCAUGGCCC-CCAGCCAUGAGCUCCACCAAGUUCAA
(((((((((((((.(....)))).((((((((((((...))))))))))))....))))))))))(((((((....((.....((((((((..-...))))))))..))))))))).... ( -42.20)
>DroSec_CAF1 6146 120 - 1
GCAUUUUAGAACGCCGCCAGUUCCAGGGUCAGUUGAACGUUAACUGGCCCUUUCAUUUGGAGCGUAUUUGGUUCAAGGCUGUUCUCAUGGUCCCCCAGCCAUGAGCUCCACCAAGUUAAA
((......((((((((((((((((((((((((((((...))))))))))).......)))))).....))))....))).))))(((((((......))))))))).............. ( -41.91)
>DroSim_CAF1 5350 119 - 1
GCAUUUUAGAACGCCGCCUGUUCCAGGGUCAGUUGAACGUUAACUGGCCCUUUCGUUUGGAGCGUAUUUGGUUCAAGGCUGUUCUCAUGGUCC-ACAGCCAUGAGCUCCACCAAGUUCAA
........((((((((..((((((((((((((((((...))))))))))).......)))))))....))))....((..(..((((((((..-...))))))))..)..))..)))).. ( -42.51)
>DroEre_CAF1 5399 119 - 1
GUAUUUUAGAGCGUAGCCAGUGCCAGGGUCACUUUGACCUUAACUGGCCCUUUCGCUUGGAGCGUAUUUGGUUCAAGGCUGUUCUCAUGGCCC-GCAGCCAUGAGCUCCAUCAAGUUCAA
........(((((..((((((...((((((.....)))))).)))))).....)))))(((((.....(((((...((((((....)))))).-..)))))...)))))........... ( -44.50)
>DroYak_CAF1 5498 112 - 1
GUAUUUUAGAGCGUCGCCAGUGCCAGGGCCAGUUUGACGUUAACUGGCCCUUUCGUUUGGAGCGUAUAUAGUUCAAGGCUGUUCUCAUGGCCC-CCA-------GCUCCAUCAAGUUCAA
........((((...((((..(((((((((((((.......))))))))))........((((.......))))..)))........))))..-...-------))))............ ( -36.10)
>consensus
GCAUUUUAGAGCGUCGCCAGUGCCAGGGUCAGUUGAACGUUAACUGGCCCUUUCGUUUGGAGCGUAUUUGGUUCAAGGCUGUUCUCAUGGCCC_CCAGCCAUGAGCUCCACCAAGUUCAA
........((((............((((((((((((...))))))))))))......((((((.....(((((...((((((....))))))....)))))...))))))....)))).. (-35.28 = -35.84 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:03 2006