| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 11,987,569 – 11,987,666 |
| Length | 97 |
| Max. P | 0.657226 |
| Location | 11,987,569 – 11,987,666 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 84.48 |
| Mean single sequence MFE | -37.10 |
| Consensus MFE | -27.45 |
| Energy contribution | -26.76 |
| Covariance contribution | -0.69 |
| Combinations/Pair | 1.33 |
| Mean z-score | -2.26 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.657226 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11987569 97 + 22407834 GACAAUUGCCGGGCAAUGGGCGGUCCGUC--AAUCAGAAUAUCGCUUUUCC-GCCGGAUCCCCCGCCUACGGCAAUCGCCCUUGAGCCUGGCCUGCACUU .......(((((((..(((((((((((((--.....)).....((......-))))))....))))))).(((....))).....)))))))........ ( -34.10) >DroPse_CAF1 46052 100 + 1 GGCAAUUGCCGGGCCCCAGGCAGUCCAACACAAUCAAAGAAUCGCUUUUCCAGUUGGGUCUGUCGGCCACGGCAAUCGCCCUUGAGCUUGGUCUGCACCA (((.(((((((((((...(((((((((((......((((.....))))....)))))).))))))))).))))))).)))........((((....)))) ( -40.00) >DroSec_CAF1 5583 97 + 1 GACAAUUGCCGGGCAAUGGGCGAUCCGUU--AAUCAGAAUAUCGCUUUUCC-GCCGGAUCCGCCGCCUACGGCAAUCGCCCUUGAGCCUGGCCUGCACUU .......(((((((...((((((((((..--.....(.....)((......-)))))))).((((....))))....))))....)))))))........ ( -37.60) >DroSim_CAF1 6337 97 + 1 GACAAUUGCCGGGCAAUGGGCGAUCCGUU--AAUCAGAAUAUCGCUUUUCC-GCCGGAUCCGCCGCCUACGGCAAUCGCCCUUGAGCCUGGCCUGCACUU .......(((((((...((((((((((..--.....(.....)((......-)))))))).((((....))))....))))....)))))))........ ( -37.60) >DroEre_CAF1 5592 97 + 1 GACAAUUGCCGGGCAAUGGGUGGUCCGUC--AAUCAGAAUAUCGCUUUUCC-GUCGGAUCCCCCGCCUACGGCAAUCGCCCUUGAGCCUGGCCUGCACUU .......(((((((...(((.((((((..--...(.(((........))).-).)))))).)))......(((....))).....)))))))........ ( -33.30) >DroPer_CAF1 45946 100 + 1 GGCAAUUGCCGGGCCCCAGGCAGUCCAACACAAUCAAAGAAUCGCUUUUCCAGUUGGGUCUGUCGGCCACGGCAAUCGCCCUUGAGCUUGGUCUGCACCA (((.(((((((((((...(((((((((((......((((.....))))....)))))).))))))))).))))))).)))........((((....)))) ( -40.00) >consensus GACAAUUGCCGGGCAAUGGGCGGUCCGUC__AAUCAGAAUAUCGCUUUUCC_GCCGGAUCCGCCGCCUACGGCAAUCGCCCUUGAGCCUGGCCUGCACUU .......(((((((...((((((((((...........................)))))).((((....))))....))))....)))))))........ (-27.45 = -26.76 + -0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:55 2006