Locus 4185

Sequence ID 2L_DroMel_CAF1
Location 11,981,130 – 11,981,230
Length 100
Max. P 0.671677
window6615

overview

Window 5

Location 11,981,130 – 11,981,230
Length 100
Sequences 5
Columns 113
Reading direction forward
Mean pairwise identity 82.89
Mean single sequence MFE -19.68
Consensus MFE -15.64
Energy contribution -17.00
Covariance contribution 1.36
Combinations/Pair 1.05
Mean z-score -1.64
Structure conservation index 0.79
SVM decision value 0.29
SVM RNA-class probability 0.671677
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11981130 100 + 22407834
AACUCAGAUCAAUGCCGCAAGGCAAUCUUCUC----UUACAUUUUUGCUACAUUUUAUGAGCACUUU-CCUAUCAC--------UUUCUUAGUCACAGCUACGGAUAAUAAGU
.....(((....((((....))))....)))(----(((......((((.(((...)))))))....-........--------.(((.((((....)))).)))...)))). ( -16.40)
>DroSec_CAF1 200527 100 + 1
AACUCAGAUCAAUGCCGCAAGGCAAUCUUCUC----UUACAUUUUUGCUACAUUUUAUGAGCACUUU-CCUAUCAC--------UUUCUUAGUCACAGCUAGGGAUAAUAAGC
.....(((....((((....))))....)))(----(((......((((.(((...)))))))....-........--------.((((((((....))))))))...)))). ( -20.00)
>DroSim_CAF1 166980 99 + 1
AACUCAGAUCAAUGCCGCAAGGCAAUCUUCUC----UUACAUUUUUGCUACAUUUUAUGAGCA-UUU-CCUAUCAC--------UUUCUUAGUCACGGCUAGGGAUAAUAAGC
.....(((....((((....))))....)))(----(((......((((.(((...)))))))-...-........--------.((((((((....))))))))...)))). ( -21.60)
>DroEre_CAF1 175106 107 + 1
UAUUCAGAUCAAUGCCGAAGGGCAACCUUCUUAAUAUAUUAUAUUUGCUGCAUUUCAUGAGCACUUUUCCUAUCAGUUUUCCUAUUUCUUAGUCACAGC------UAAUAAGG
((((.(((....((((....))))....))).)))).....((((.((((........(((.(((.........))).)))(((.....)))...))))------.))))... ( -17.10)
>DroYak_CAF1 172185 100 + 1
AACUCAGUUCGAUGCCGAAAGGCAACCUUCUC----UAACAUUUUUGCUACAUUUUAUGAGCACUUU-CCCAUUAC--------UUUCUUGGUGACAGCCAGGGAUAAUAAGG
............((((....)))).((((...----.........((((.(((...)))))))....-........--------.((((((((....))))))))....)))) ( -23.30)
>consensus
AACUCAGAUCAAUGCCGCAAGGCAAUCUUCUC____UUACAUUUUUGCUACAUUUUAUGAGCACUUU_CCUAUCAC________UUUCUUAGUCACAGCUAGGGAUAAUAAGC
.....(((....((((....))))....)))..............((((.(((...)))))))......................((((((((....))))))))........ (-15.64 = -17.00 +   1.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:52 2006