Locus 4184

Sequence ID 2L_DroMel_CAF1
Location 11,980,796 – 11,980,890
Length 94
Max. P 0.916022
window6614

overview

Window 4

Location 11,980,796 – 11,980,890
Length 94
Sequences 5
Columns 94
Reading direction reverse
Mean pairwise identity 96.06
Mean single sequence MFE -16.48
Consensus MFE -15.94
Energy contribution -15.30
Covariance contribution -0.64
Combinations/Pair 1.21
Mean z-score -1.32
Structure conservation index 0.97
SVM decision value 1.11
SVM RNA-class probability 0.916022
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11980796 94 - 22407834
GAGGACAAUCAUGGGAAAUCUUAUGUCUAAUGCAUAGGAAAAACUCAAAUAGAAAAUGAGAAUAAAAGUCAUUAAAGAUUGACUACUGUCAGGU
...((((....((((...((((((((.....))))))))....))))...................(((((........)))))..)))).... ( -18.40)
>DroSec_CAF1 200197 94 - 1
GAGGACAAUCAUGGGAAAUUUCAUGUCUAAUGCAUAGGAAAAACUCAAAUAGAAAAUGAGAAUAAAAGUCAUUAAAGAUUGACUACUGUCAGGU
...((((....((((...((((((((.....)))).))))...))))...................(((((........)))))..)))).... ( -14.70)
>DroSim_CAF1 166651 94 - 1
GAGGACAAUCAUGGGAAAUCUCAUGUCUAAUGCAUAGGAAAAACUCAAAUAGAAAAUGAGAAUAAAAGUCAUUAAAGAUUGACUACUGUCAGGU
...((((..((((((....))))))..................((((.........))))......(((((........)))))..)))).... ( -16.80)
>DroEre_CAF1 174764 94 - 1
GAGGACAAUCAUGGGAAAUCUCAUGUCUAAUGCAUAGGAAAAACUCAAACACCAAAUGGGAAUAAAAGUCAUUAAAGAUUGACUACUGUCAGGU
...((((.((.((((...((..((((.....))))..))....))))....((....)))).....(((((........)))))..)))).... ( -16.50)
>DroYak_CAF1 171831 94 - 1
GAGGACAAUCAUGGGAAAUCUCGUGUCUAAUGCAUAGGAAAAACUCAAAUACGAAAUGAGCAUAAAAGUCAUUAAAGAUUGACUACUGUCAGGU
...((((..((((((....))))))....((((...(......)((......)).....))))...(((((........)))))..)))).... ( -16.00)
>consensus
GAGGACAAUCAUGGGAAAUCUCAUGUCUAAUGCAUAGGAAAAACUCAAAUAGAAAAUGAGAAUAAAAGUCAUUAAAGAUUGACUACUGUCAGGU
...((((..((((((....))))))..................((((.........))))......(((((........)))))..)))).... (-15.94 = -15.30 +  -0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:51 2006