| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 11,975,363 – 11,975,467 |
| Length | 104 |
| Max. P | 0.518375 |
| Location | 11,975,363 – 11,975,467 |
|---|---|
| Length | 104 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 73.33 |
| Mean single sequence MFE | -15.21 |
| Consensus MFE | -2.64 |
| Energy contribution | -3.00 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.49 |
| Structure conservation index | 0.17 |
| SVM decision value | -0.03 |
| SVM RNA-class probability | 0.518375 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11975363 104 + 22407834 UGUGCAUUCAAAACUUCAAUCAUGCUGCUUCAAUGCUGC----------------ACAUGAAACCUAUCCAUAAAAACCCACAUAAUGUCAUAAAAUUUAAGGACACUUAAAUAUCAAUA ((((((((..............(((.((......)).))----------------).(((.........)))............)))).))))..(((((((....)))))))....... ( -12.40) >DroSec_CAF1 194815 99 + 1 UGUGCAUUCAAUACUUAAAUCAU-----UGCAUUGCUGC----------------ACAUGAAGGUUAUCUAUAAAAACACACAUAAUGUGAUAAAAUUUAAGGACACUUAAAUAUCAAUA ((((((..((((.(.........-----.).)))).)))----------------)))(((................((((.....)))).....(((((((....))))))).)))... ( -15.60) >DroSim_CAF1 161203 99 + 1 UGUGCAUUCAAGACUUCAAUCAU-----UGCAUUGCUGC----------------ACAUGAAGGUUAUCCAUAAAAACCCACAUAAUGUCAUAAAAUUUAAGGACACUUAAAUAUCAAUA ((((((((...........((((-----((((....)))----------------).)))).((((.........)))).....)))).))))..(((((((....)))))))....... ( -15.30) >DroEre_CAF1 169232 114 + 1 UUGGUAUACGAAACUACAAUCAU-----UGCACUGCUGCAAUGUACUCAUAAUUCAUAGAAAACCUAUCCA-AAAAUCCCAUCUAGUGUCAUUAAAUUUAGGGGCACUAAAAUAUCAAUA (((((((..(((........(((-----((((....))))))).........)))................-...........(((((((.(((....))).)))))))..))))))).. ( -19.93) >DroYak_CAF1 166196 114 + 1 UUUAUGUUCAAAACUGCAAACAU-----AGCACUGCUGCAAUUUACUCAUAAUGCAUAAGAAACCUAUCCG-AAGAACCCAUCUAAUGUCAUUAAAUGUAGGCACACUAAAAUAUCAAUA ..............(((..((((-----.(((....)))..........((((((((.(((......((..-..)).....))).))).))))).))))..)))................ ( -12.80) >consensus UGUGCAUUCAAAACUUCAAUCAU_____UGCACUGCUGC________________ACAUGAAACCUAUCCAUAAAAACCCACAUAAUGUCAUAAAAUUUAAGGACACUUAAAUAUCAAUA ...............................................................................................(((((((....)))))))....... ( -2.64 = -3.00 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:45 2006