Locus 418

Sequence ID 2L_DroMel_CAF1
Location 1,237,175 – 1,237,293
Length 118
Max. P 0.556400
window675

overview

Window 5

Location 1,237,175 – 1,237,293
Length 118
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 94.07
Mean single sequence MFE -17.75
Consensus MFE -14.95
Energy contribution -15.20
Covariance contribution 0.25
Combinations/Pair 1.00
Mean z-score -1.58
Structure conservation index 0.84
SVM decision value 0.05
SVM RNA-class probability 0.556400
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1237175 118 - 22407834
AACAACUUUGCAACUCGCA--UGUUUUUGUCCCCAGUCAACUAUAAAAAGAAGCACAGGAGCGUAAAUAAUACAACAAGAAUAUAUGCACAUAAUAGUAAAUAAAUAUGAAAAUAUUGCA
........(((.....(((--(((((((((......................((......))(((.....))).))))))..))))))...............(((((....)))))))) ( -15.70)
>DroSec_CAF1 14583 116 - 1
AACAACUUUGCAACUCGCA--UGUUUUUGUCCCCAGUCAACUAUAAAAAG--GCACAGGAGCGAAAAUAAUACAACAAGAAUAUAUGCACAUAAUAAUAAAUAAAUAUGAAAAUAUUGCA
........(((.....(((--((((((((..((..(((...........)--))...))..))))))))...(.....)......)))...............(((((....)))))))) ( -15.60)
>DroSim_CAF1 10705 118 - 1
AACAACUUUGCAACUCGCAAAUGUUUUUGUCCCCAGUCAACUAUAAAAAG--GCACAGGAGCGUAAAUAAUACAACAAGAAUAUAUGCACAUAAUAAUAAAUAAAUAUGAAAAUAUUGCA
........(((.....(((.((((((((((((...(((...........)--))...)))..(((.....)))..))))))))).)))...............(((((....)))))))) ( -19.40)
>DroYak_CAF1 10626 112 - 1
AG----UCCGCAACUCGCA--UGUUUUUGUCCCCAGUCAACUAUAAAAAG--GCACAGGAGCGUAAAUAAUACAACAAGAAUAUGUGCACAUAAUAAUAAAUAAAUAUGAAAAUAUUGCA
..----...((....((((--(((((((((((...(((...........)--))...)))..(((.....)))..))))))))))))................(((((....))))))). ( -20.30)
>consensus
AACAACUUUGCAACUCGCA__UGUUUUUGUCCCCAGUCAACUAUAAAAAG__GCACAGGAGCGUAAAUAAUACAACAAGAAUAUAUGCACAUAAUAAUAAAUAAAUAUGAAAAUAUUGCA
.........((.....(((..(((((((((......................((......))(((.....))).)))))))))..)))...............(((((....))))))). (-14.95 = -15.20 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:40 2006