Locus 4179

Sequence ID 2L_DroMel_CAF1
Location 11,974,882 – 11,974,996
Length 114
Max. P 0.500000
window6606

overview

Window 6

Location 11,974,882 – 11,974,996
Length 114
Sequences 5
Columns 114
Reading direction reverse
Mean pairwise identity 97.01
Mean single sequence MFE -17.71
Consensus MFE -17.19
Energy contribution -17.23
Covariance contribution 0.04
Combinations/Pair 1.04
Mean z-score -1.06
Structure conservation index 0.97
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11974882 114 - 22407834
UAAACGCGGCGAUUGUUGUUGUCUCCCCGCCGCUUCUCCUCCGCCCACUUUUUCUUUUUUAGAGUAAUUAAGAAAUCCUCUUUACGGUUCAGUUUCUCUCCCUCUUUCCGUAAU
.....((((((................)))))).................((((((..(((...)))..))))))......((((((...((...........))..)))))). ( -18.69)
>DroSec_CAF1 194365 113 - 1
UAAACGCGGCGAUUGUUGUUGUCUCCCCGCCGCUUCUCCUCCGCC-CCUUUUUCUUUUUUAGAGUAAUUAAGAAAUCCUCUUUACGGUUCAGUUUCUCUCCCUCUUUCCGUAAU
.....((((((................))))))............-....((((((..(((...)))..))))))......((((((...((...........))..)))))). ( -18.69)
>DroSim_CAF1 160749 114 - 1
UAAACGCGGUGAUUGUUGUUGUCUCCCCGCCGCUUCUCCUCCGCCCCCUUUUUCUUUUUUAGAGUAAUUAAGAAAUCCUCUUUACGGUUCAGUUUCUCUCCCUCUUUCCGUAAU
.....((((((................)))))).................((((((..(((...)))..))))))......((((((...((...........))..)))))). ( -16.79)
>DroEre_CAF1 168753 111 - 1
UAAACUCGGCGAUUGUUGUUGUCUCCCCGCCGCUUCUC---CGCCCCCUUUUUCUUUUUUAGAGUAAUUAAGAAAUCCUCUUUACGGUUCAGUUUCUCUCCCUCUUUCCGUAAU
...((((((((................))))((.....---.)).................))))................((((((...((...........))..)))))). ( -15.69)
>DroYak_CAF1 165653 111 - 1
UAAACGCGGCGAUUGUUGUUGUCUCCCCGCCGCUUCUC---CGCCCCCUUUUUCUUUUUUAGAGUAAUUAAGAAAUCCUCUUUACGGUUCAGUUUCUCUCCCUCUUUCCGUAAU
.....((((((................)))))).....---.........((((((..(((...)))..))))))......((((((...((...........))..)))))). ( -18.69)
>consensus
UAAACGCGGCGAUUGUUGUUGUCUCCCCGCCGCUUCUCCUCCGCCCCCUUUUUCUUUUUUAGAGUAAUUAAGAAAUCCUCUUUACGGUUCAGUUUCUCUCCCUCUUUCCGUAAU
.....((((((................)))))).................((((((..(((...)))..))))))......((((((...((...........))..)))))). (-17.19 = -17.23 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:44 2006