Locus 4178

Sequence ID 2L_DroMel_CAF1
Location 11,974,018 – 11,974,116
Length 98
Max. P 0.615476
window6605

overview

Window 5

Location 11,974,018 – 11,974,116
Length 98
Sequences 5
Columns 106
Reading direction reverse
Mean pairwise identity 87.85
Mean single sequence MFE -17.14
Consensus MFE -11.05
Energy contribution -11.05
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -2.47
Structure conservation index 0.64
SVM decision value 0.17
SVM RNA-class probability 0.615476
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11974018 98 - 22407834
AAAAAA--ACAAAAGAAAA--AUCUUUUU----CCCGAAUGCAAUUUGCCAAAUGUCUUCACCAAUGAUUGCAACAAAAGCGGCAACGAAAGCCAGCCAAAAACAA
......--..((((((...--.)))))).----......(((((((.......((....)).....)))))))........(((..(....)...)))........ ( -12.90)
>DroSec_CAF1 193503 100 - 1
AAAAAAAAAAAAAAGAAAA--AUCUUUUU----CCCGAAUGCAAUUUGCCAAAUGUCUUCACCAAUGAUUGCAACAAAAGCGGCAACGAAAGCCAGCCAAAAACAA
.........(((((((...--.)))))))----......(((((((.......((....)).....)))))))........(((..(....)...)))........ ( -13.80)
>DroSim_CAF1 159888 98 - 1
AAAAAA--ACAAAAGAAAA--AUCUUUUU----CCCGAAUGCAAUUUGCCAAAUGUCUUCACCAAUGAUUGCAACCAAAGCGGCAACGAAAGCCAGCCAAAAACAA
......--..((((((...--.)))))).----......(((((((.......((....)).....)))))))........(((..(....)...)))........ ( -12.90)
>DroEre_CAF1 167912 101 - 1
CACGGU--ACACAAAAAAA---GCAUUUGGGAAACCAAAUGCAAUUUGCCAAAUGUCUUUGCCAAUGAUUGCAACACAAGCGGCAACGAAAGCCAGCCAAAAACAA
...(((--...........---((((((((....))))))))...(((((...(((..((((........)))).)))...)))))(....)...)))........ ( -28.70)
>DroYak_CAF1 164761 100 - 1
CAAGGU--ACAAAAAAAAAAUAGCGUUUU----CCCGAAUGCAAUUUGCCAAAUGUCUUUGCCAAUGAUUGCAACAAAAGCGGCAACGAAAGCCAGCCAAAAACAA
(((((.--(((......((((.((((((.----...)))))).))))......)))))))).........((.......))(((..(....)...)))........ ( -17.40)
>consensus
AAAAAA__ACAAAAGAAAA__AUCUUUUU____CCCGAAUGCAAUUUGCCAAAUGUCUUCACCAAUGAUUGCAACAAAAGCGGCAACGAAAGCCAGCCAAAAACAA
.......................................(((((((....................)))))))........(((..(....)...)))........ (-11.05 = -11.05 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:43 2006