Locus 4175

Sequence ID 2L_DroMel_CAF1
Location 11,970,391 – 11,970,500
Length 109
Max. P 0.847298
window6596

overview

Window 6

Location 11,970,391 – 11,970,500
Length 109
Sequences 5
Columns 117
Reading direction forward
Mean pairwise identity 93.49
Mean single sequence MFE -32.44
Consensus MFE -27.78
Energy contribution -27.78
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.49
Structure conservation index 0.86
SVM decision value 0.77
SVM RNA-class probability 0.847298
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11970391 109 + 22407834
CGAUCAUGGCUUGUGGGUCUCGACGAGGU--------GUAUACGGGCAUUUUGACUCGUAUACACGCGCUUCUAUUAGACCUUUUGACUGUUGGCCACGCUAAUUUCUGUCUAAUGU
.........(((((.(....).)))))((--------((((((((((.....).))))))))))).......((((((((.....((..((((((...)))))).)).)))))))). ( -31.60)
>DroSec_CAF1 189777 109 + 1
CGAUCAUGGCUUUUGGGUCUCGUCGAGGU--------GUAUACGGGCAUUUUGACUCGUAUACACGCGCUUCUAUUAGACCUUUUGACUGUUGGCCACGCUAAUUUCUGUCUAAUGU
((((...((((....))))..))))..((--------((((((((((.....).))))))))))).......((((((((.....((..((((((...)))))).)).)))))))). ( -32.60)
>DroSim_CAF1 156140 109 + 1
CGAUCAUGGCUUUUGGGUCUCGACGAGGU--------GUAUACGGGCAUUUUGACUCGUAUACACGCGCUUCUAUUAGACCUUUUGACUGUUGGCCACGCUAAUUUCUGUCUAAUGU
((.((..((((....))))..))))..((--------((((((((((.....).))))))))))).......((((((((.....((..((((((...)))))).)).)))))))). ( -31.10)
>DroEre_CAF1 164390 109 + 1
CGAUCAUGGCUUUUGGGUCUCGCCGAGGU--------GUAUACGGGCAUUUUGACUCGUAUACACGCGCUUCUAUUAGACCUUUUGACUGUUGGCCACGCUAAUUUCUGUCUUUAGU
.......((((..((((...(((....((--------((((((((((.....).))))))))))))))..))))..)).))....(((.((((((...))))))....)))...... ( -30.40)
>DroYak_CAF1 161052 114 + 1
CGAUCAUGGCUUUUGGGUCUCGCCGAGGUGUACGAGUGUAUACGGGCAUUUGGACUCGUAUACACGCGCUUCUAUUAGACCUUUUGACUGUUGGCCACGCUAAUUUCUGUCUAU---
..............((((((....(((((((....(((((((((((........))))))))))))))))))....))))))...(((.((((((...))))))....)))...--- ( -36.50)
>consensus
CGAUCAUGGCUUUUGGGUCUCGACGAGGU________GUAUACGGGCAUUUUGACUCGUAUACACGCGCUUCUAUUAGACCUUUUGACUGUUGGCCACGCUAAUUUCUGUCUAAUGU
..............((((((....(((((........((((((((((.....).)))))))))....)))))....))))))...(((.((((((...))))))....)))...... (-27.78 = -27.78 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:35 2006