Locus 4173

Sequence ID 2L_DroMel_CAF1
Location 11,968,796 – 11,968,896
Length 100
Max. P 0.686877
window6593

overview

Window 3

Location 11,968,796 – 11,968,896
Length 100
Sequences 3
Columns 100
Reading direction reverse
Mean pairwise identity 94.00
Mean single sequence MFE -21.33
Consensus MFE -18.37
Energy contribution -18.70
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -2.12
Structure conservation index 0.86
SVM decision value 0.32
SVM RNA-class probability 0.686877
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11968796 100 - 22407834
AUAUGAUUAAAUUUAUUACACACUUCUUGGAAGUGUUCGCUAGUUCUUGGUUCUAGUUCCAGUGCGUUUUUUAGUAUCUGGUUUUUGAUUAUAUGGCGUU
(((((((((((........(((((((...)))))))..(((((.........))))).(((((((........))).))))..)))))))))))...... ( -22.30)
>DroSec_CAF1 188206 96 - 1
AUAUGAUUAAAUUUAUUACACACUUCUUGGAAGUGUUUGCUAGAUCUUGGUUCUAGUUCCAG----UUUUUUAGUAUCAGUUUUUUGAUUAUAUGGCUUU
(((((((((((........(((((((...))))))).(((((((..((((........))))----...))))))).......)))))))))))...... ( -21.00)
>DroSim_CAF1 154561 100 - 1
AUAUGAUUAAAUUUAUUACACACUUCUUGGAAGUGUUCGCUAGAUCUUGGUUCUAGUUCCAGUGCGUUUUUUAGUAUCAGGUUUUUGAUUAUAUGGCGUU
(((((((((((........(((((((...)))))))..((((((.......)))))).((.((((........))))..))..)))))))))))...... ( -20.70)
>consensus
AUAUGAUUAAAUUUAUUACACACUUCUUGGAAGUGUUCGCUAGAUCUUGGUUCUAGUUCCAGUGCGUUUUUUAGUAUCAGGUUUUUGAUUAUAUGGCGUU
(((((((((((.....((((((((((...)))))))..((((((.......))))))................))).......)))))))))))...... (-18.37 = -18.70 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:32 2006