Locus 4172

Sequence ID 2L_DroMel_CAF1
Location 11,968,550 – 11,968,645
Length 95
Max. P 0.821083
window6592

overview

Window 2

Location 11,968,550 – 11,968,645
Length 95
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 77.65
Mean single sequence MFE -27.66
Consensus MFE -22.26
Energy contribution -22.86
Covariance contribution 0.60
Combinations/Pair 1.00
Mean z-score -1.40
Structure conservation index 0.80
SVM decision value 0.68
SVM RNA-class probability 0.821083
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11968550 95 - 22407834
GCAUUCCAUU-------GAU----CCU------A--------CCUGUGAUCCUUUCACAGUCGCAUACAACUGGUUAAGUAUCCACUUGGCUGUUAGAGCACCGGAAGGUCGACCAGUUA
((..((....-------)).----...------.--------.((((((.....))))))..))....((((((((.............(((.....)))(((....))).)))))))). ( -25.50)
>DroSec_CAF1 187960 95 - 1
GCAUUCCAUU-------GAU----CCC------A--------CCUGUGAUCCUUUCACACCGGCAUACAACUGGUUAAGUAUCCACUUGGCUGUUAGAGCACCGGAAGGUCGACCAGUUA
.......(((-------(.(----(..------(--------(((((((.....)))).((((..(..(((.((((((((....)))))))))))..)...)))).)))).)).)))).. ( -23.10)
>DroSim_CAF1 154315 95 - 1
GCAUUCCAUU-------GAU----CCC------A--------CCUGCGAUCCUUUCACACCGGCAUACAACUGGUUAAGUAUCCACUUGGCUGUUAGAGCACCGGAAGGUCGACCAGUUA
((........-------(((----(.(------.--------...).))))...........))....((((((((.............(((.....)))(((....))).)))))))). ( -20.91)
>DroEre_CAF1 162626 120 - 1
GCUGUCCCAUAUGAAUUUACAACACUUGUACUGAUCUCCAUUCCUGUGAUCCUGUCACAGAGCCCUCCAACUGGUUGAGCCUCCACUUUGCUGUUAGAGCACCGGAAGGUCGACCAGUUA
(((..............((((.....)))).............(((((((...)))))))))).....((((((((((.(((((....((((.....))))..)).))))))))))))). ( -33.40)
>DroYak_CAF1 159144 105 - 1
GCUUUCCAAUAUCAUUUUAC----CCUGU---GAU--------CUGUGAUCCUUUCACAGAGACAGGUAACUGGUUAGGUAUCCACUUGGCUGUUAGAGCACCGGAAGGUCGACCAGUUA
....................----(((((---..(--------((((((.....))))))).)))))(((((((((.............(((.....)))(((....))).))))))))) ( -35.40)
>consensus
GCAUUCCAUU_______GAU____CCU______A________CCUGUGAUCCUUUCACAGAGGCAUACAACUGGUUAAGUAUCCACUUGGCUGUUAGAGCACCGGAAGGUCGACCAGUUA
...........................................((((((.....))))))........((((((((.............(((.....)))(((....))).)))))))). (-22.26 = -22.86 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:31 2006