Locus 417

Sequence ID 2L_DroMel_CAF1
Location 1,236,956 – 1,237,063
Length 107
Max. P 0.771280
window674

overview

Window 4

Location 1,236,956 – 1,237,063
Length 107
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 86.90
Mean single sequence MFE -25.50
Consensus MFE -17.52
Energy contribution -18.27
Covariance contribution 0.75
Combinations/Pair 1.00
Mean z-score -2.06
Structure conservation index 0.69
SVM decision value 0.53
SVM RNA-class probability 0.771280
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1236956 107 - 22407834
UUGCAUUUGUACUGAUUUUAUUUGGUUUUUAUUGAAUUGAUAAAAUCACAACGGCCAGGCGAGUCC----------UCGAGUCCUCGUCCUUGCGCUCCCCCAACCUUUU--CACC-CUC
..((...(((..((((((((.(..((((.....))))..)))))))))..)))((.(((((((..(----------....)..)))).))).))))..............--....-... ( -24.60)
>DroSec_CAF1 14362 109 - 1
UUGCAUUUGUACUGAUUUUAUUUGGUUUUUAUUGAAUUGAUAAAAUCACAACGGCCAGGCGAGUCC----------UCGAGUCCUCGUCCUUGCGCUCUCCCCCUCCUUUUCCCCC-AUC
..((...(((..((((((((.(..((((.....))))..)))))))))..)))((.(((((((..(----------....)..)))).))).))))....................-... ( -24.60)
>DroSim_CAF1 10484 109 - 1
UUGCAUUUGUACUGAUUUUAUUUGGUUUUUAUUGAAUUGAUAAAAUCACAACGGCCAGGCGAGUCC----------UCGAGUCCUCGUCCUUGCGCUCUCUCCCCCUUUUUCCCCC-AUC
..((...(((..((((((((.(..((((.....))))..)))))))))..)))((.(((((((..(----------....)..)))).))).))))....................-... ( -24.60)
>DroYak_CAF1 10388 118 - 1
UUGCAUUUGUACUGAUUUUAUUUGGUUUUUAUUGAAUUGAUAAAAUCACAACGGCCAGGCGUAGCCAGCGAGCAGUUCGAGUCCUCGUCCUUGCUCUCG--UCCUGUUUUUCCCCCUCUC
..((....((..((((((((.(..((((.....))))..)))))))))..))(((........))).))((((((..((((..(........)..))))--..))))))........... ( -28.20)
>consensus
UUGCAUUUGUACUGAUUUUAUUUGGUUUUUAUUGAAUUGAUAAAAUCACAACGGCCAGGCGAGUCC__________UCGAGUCCUCGUCCUUGCGCUCUCCCCCCCUUUUUCCCCC_AUC
..((...(((..((((((((.(..((((.....))))..)))))))))..)))((.(((((((....................)))).))).))))........................ (-17.52 = -18.27 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:39 2006