Locus 4169

Sequence ID 2L_DroMel_CAF1
Location 11,966,155 – 11,966,261
Length 106
Max. P 0.715215
window6587

overview

Window 7

Location 11,966,155 – 11,966,261
Length 106
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 79.85
Mean single sequence MFE -17.83
Consensus MFE -12.98
Energy contribution -14.35
Covariance contribution 1.37
Combinations/Pair 1.07
Mean z-score -1.68
Structure conservation index 0.73
SVM decision value 0.39
SVM RNA-class probability 0.715215
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11966155 106 - 22407834
CGAUCUAGCAUGUUCAGCAGAUUAGUUUUAAUUAAUAUGUGCUACAAUAGUAUUAAUUAAAAUCCUUGCUUCCUUACAUUUAUUAUGCAAUAAAUGC----AUUGCUGCA----------
.....(((((.....(((((....((((((((((((((.((...))...))))))))))))))..)))))......((((((((....)))))))).----..)))))..---------- ( -20.80)
>DroSec_CAF1 185551 103 - 1
CGAUCUAACACAC---GCAGAAUAGUUUUAAUUAAUAUGUGAAACAAUAGUAUUAAUUAAAAUCCUUGCUUCCUUCCAUUUAUUAUGCAAUAAAUGC----AUUGCUGCA----------
.............---((((....((((((((((((((.((...))...)))))))))))))).............((((((((....)))))))).----....)))).---------- ( -18.70)
>DroSim_CAF1 151903 103 - 1
CGAUCUAACACAC---GCAGAAUAGUUUUAAUUAAUAUGUGCAACAACAGUAUUAAUUAAAAUCCUUGCUUCCUUCCAUUUAUUAAGCAAUAAAUGC----AUUGCUGCA----------
.............---((((....((((((((((((((((......))).))))))))))))).............((((((((....)))))))).----....)))).---------- ( -20.40)
>DroYak_CAF1 156684 120 - 1
CUAUUUAACAUAUUCCACAGAACAGCUUUAGUUAACCAGUGCUACAAUAGAAUUAAUUAAAAUCCUUGCUUUCCUCCAUUUACUAUCCAAUAAAUUCAGGCUUUGCUGCAUAUUUGUUAG
.....(((((.((....(((...(((((((((........)))).....(((((.(((..............................))).))))))))))...)))...)).))))). ( -11.41)
>consensus
CGAUCUAACACAC___GCAGAAUAGUUUUAAUUAAUAUGUGCAACAAUAGUAUUAAUUAAAAUCCUUGCUUCCUUCCAUUUAUUAUGCAAUAAAUGC____AUUGCUGCA__________
................((((....((((((((((((((((......))).))))))))))))).............((((((((....)))))))).........))))........... (-12.98 = -14.35 +   1.37)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:26 2006