Locus 4162

Sequence ID	2L_DroMel_CAF1
Location	11,962,286 – 11,962,378
Length	92
Max. P	0.975880

overview

Window 0

Location	11,962,286 – 11,962,378
Length	92
Sequences	5
Columns	92
Reading direction	forward
Mean pairwise identity	97.17
Mean single sequence MFE	-20.64
Consensus MFE	-19.32
Energy contribution	-19.60
Covariance contribution	0.28
Combinations/Pair	1.04
Mean z-score	-1.65
Structure conservation index	0.94
SVM decision value	1.76
SVM RNA-class probability	0.975880
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11962286 92 + 22407834
AUUUCGCCACUCAAUCUUAUCAAACACCAAUGGCCGGCAACAAAUUUUCGUUGCAUUUUACCGCAGGUUCAGAUAAAUGUCAUUCGCAGGCA
.....(((........(((((....(((..(((...(((((........)))))......)))..)))...))))).(((.....)))))). ( -18.50)
>DroSec_CAF1 181756 92 + 1
AUUUCGCCACUCAAUCUUAUCAAACACCAAUGGCCUGCAACAAAUUUUCGUUGCAUUUUGCCGCAGGUUCAGAUAAAUGUCAUUCGCAGGCA
.....(((........(((((....(((..((((.((((((........))))))....))))..)))...))))).(((.....)))))). ( -22.80)
>DroSim_CAF1 148132 92 + 1
AUUUCGCCACUCAAUCUUAUCAAACACCAAUGGCCGGCAACAAAUUUUCGUUGCAUUUUGCCGCAGGUUCAGAUAAAUGUCAUUCGCAGGCA
.....(((........(((((....(((..((((..(((((........))))).....))))..)))...))))).(((.....)))))). ( -22.10)
>DroEre_CAF1 156610 92 + 1
AUUUCGCCACUCAAUCUUAUCAAACAGCAAUGGUCGGCAACAAAUUCUCGUUGCAUUUUGCCGCAGGUUCAGAUAAAUGUCAUUCGCAGGCA
.....(((........(((((....(((..((((..(((((........))))).....))))...)))..))))).(((.....)))))). ( -17.70)
>DroYak_CAF1 152719 92 + 1
AUUUCGCCACUCAAUCUUAUCAAACACCAAUGGCCGGCAACAAAUUCGCGUUGCAUUUUGCCGCAGGUUCAGAUAAAUGUCAUUCGCAGGCA
.....(((........(((((....(((..((((..(((((........))))).....))))..)))...))))).(((.....)))))). ( -22.10)
>consensus
AUUUCGCCACUCAAUCUUAUCAAACACCAAUGGCCGGCAACAAAUUUUCGUUGCAUUUUGCCGCAGGUUCAGAUAAAUGUCAUUCGCAGGCA
.....(((........(((((....(((..((((..(((((........))))).....))))..)))...))))).(((.....)))))). (-19.32 = -19.60 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:11 2006