Locus 4158

Sequence ID 2L_DroMel_CAF1
Location 11,958,589 – 11,958,695
Length 106
Max. P 0.875710
window6562

overview

Window 2

Location 11,958,589 – 11,958,695
Length 106
Sequences 5
Columns 107
Reading direction reverse
Mean pairwise identity 97.09
Mean single sequence MFE -32.00
Consensus MFE -31.08
Energy contribution -31.16
Covariance contribution 0.08
Combinations/Pair 1.06
Mean z-score -1.30
Structure conservation index 0.97
SVM decision value 0.89
SVM RNA-class probability 0.875710
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11958589 106 - 22407834
CCAUUCUCCGUUCGCCUCUUUGCAGACAAAUGCCAUGGACUCGCUUACAAUUUGGUC-UCGUCUUGUCAAUCAAUUGGGAUCGAGUCGGGGUCUAGAACUGGAAAUG
.((((.((((((((((((...(((......)))....((((((....).....((((-(((..(((.....))).)))))))))))))))))...)))).))))))) ( -29.30)
>DroSec_CAF1 177888 106 - 1
CCAUUCUCCGUUCGCCUCUUUGCAGACAAAUGCCAUGGACUCGGUUACAAUUUGGUC-UCGUCUUGUCAAUCAAUUGGGAUCGAGUCGGGGCCUAGAACUGGAAAUG
.((((.((((((((((((...(((......)))....((((((((..(((((.(((.-...........))))))))..)))))))))))))...)))).))))))) ( -34.00)
>DroSim_CAF1 144331 106 - 1
CCAUUCUCCGUUCGCCUCUUUGCAGACAAAUGCCAUGGACUCGGUUACAAUUUGGUC-UCGUCUUGUCAAUCAAUUGGGAUCGAGUCGGGGCCUAGAACUGGAAAUG
.((((.((((((((((((...(((......)))....((((((((..(((((.(((.-...........))))))))..)))))))))))))...)))).))))))) ( -34.00)
>DroEre_CAF1 152826 106 - 1
CCAUUCUCCGUUCGCCUCUUUGCAGACAAAUGCCAUGGACUCGGUUACAAUUUGGUC-UCGUCUUGUCAAUCAAUUGGGAUCGAGUCGGGGCCAAGAACUGGAAAUG
.((((.((((((((((((...(((......)))....((((((((..(((((.(((.-...........))))))))..)))))))))))))...)))).))))))) ( -34.00)
>DroYak_CAF1 148653 107 - 1
CCAUUCUCCGUUCGCCUCUUUGCAGACAAAUGCCAUGGACUCGGUUACAAUUUGGUCGUCGUCUUGUCAAUCAAUUGGCAUCGAGUUGGUGCCCAGAACUGGAAAUG
.((((.(((((((........(((......)))(((.((((((((..(((((.(((.(.(.....).).))))))))..)))))))).)))....)))).))))))) ( -28.70)
>consensus
CCAUUCUCCGUUCGCCUCUUUGCAGACAAAUGCCAUGGACUCGGUUACAAUUUGGUC_UCGUCUUGUCAAUCAAUUGGGAUCGAGUCGGGGCCUAGAACUGGAAAUG
.((((.((((((((((((...(((......)))....((((((((..(((((.(((...(.....)...))))))))..)))))))))))))...)))).))))))) (-31.08 = -31.16 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:03 2006