Locus 4157

Sequence ID 2L_DroMel_CAF1
Location 11,957,254 – 11,957,367
Length 113
Max. P 0.952409
window6561

overview

Window 1

Location 11,957,254 – 11,957,367
Length 113
Sequences 5
Columns 113
Reading direction reverse
Mean pairwise identity 88.73
Mean single sequence MFE -31.14
Consensus MFE -23.24
Energy contribution -23.64
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -2.58
Structure conservation index 0.75
SVM decision value 1.42
SVM RNA-class probability 0.952409
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11957254 113 - 22407834
UGUAUGGUCCAUUUAGUUGUCAAUUAUUUUUGAUAGCCUCAGCUGAGGCAGCUGAUAAGAACUGGUGACUAGCAAGCACAAGACUUGUUUAACAAUCCCAGGAAAUCCGUACA
.((((((((...(((((((((((......))))).(((((....)))))))))))...)).((((.((..(((((((....).))))))......)))))).....)))))). ( -33.80)
>DroSec_CAF1 176615 91 - 1
UGUAUGGUCCAUUUAGUUGUCAAUUAUUUUUGAUAGCCUCCGCUGAGGGAGCUGAUAAGAAC----------------------UUGUUUAACAAUCCCAGGAAAUCCGUACA
.(((((((((.....((((((((......)))))))).........((((...(((((....----------------------)))))......)))).)))...)))))). ( -25.80)
>DroSim_CAF1 143016 113 - 1
UGUAUGGUCCAUUUAGUUGUCAAUUAUUUUUGAUAGCCUCGGCUGAGGCAGCUGAUAAGAACUGGUGACUAGCAAGCACAAGACUUGUUUAACAAUCCCAGGAAAUCCGUACA
.((((((((...(((((((((((......))))).(((((....)))))))))))...)).((((.((..(((((((....).))))))......)))))).....)))))). ( -33.10)
>DroEre_CAF1 151505 109 - 1
UGUAUGGUCCAUUUAGUUGUCAAUUAUUUUUGAUAGCCCCAGCUGAGGCAGCUGAUAAGAACUUGCGACUAG----CACCAGACUUGUUUAACAAUCCCAGGAAAUCCGUACA
.(((((((((.....((((((((......))))))))..((((((...))))))(((((....(((.....)----)).....)))))............)))...)))))). ( -29.20)
>DroYak_CAF1 147373 109 - 1
UGUAUGGUCCAUUUAGUUGUCAAUUAUUUUUGAUAGCCUCGGCCGAGGCAGCUGAUAAGAACUUGUGACUAG----CACAAGACUUGUUUAACAAUCCCAGGAAAUCCGUACA
.(((((((((..(((((((((((......))))).(((((....)))))))))))((((..((((((.....----)))))).)))).............)))...)))))). ( -33.80)
>consensus
UGUAUGGUCCAUUUAGUUGUCAAUUAUUUUUGAUAGCCUCAGCUGAGGCAGCUGAUAAGAACUGGUGACUAG____CACAAGACUUGUUUAACAAUCCCAGGAAAUCCGUACA
.(((((((((..(((((((((((......))))).(((((....))))))))))).............................(((.....))).....)))...)))))). (-23.24 = -23.64 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:02 2006