Locus 4153

Sequence ID 2L_DroMel_CAF1
Location 11,955,357 – 11,955,459
Length 102
Max. P 0.692736
window6548

overview

Window 8

Location 11,955,357 – 11,955,459
Length 102
Sequences 5
Columns 112
Reading direction reverse
Mean pairwise identity 94.15
Mean single sequence MFE -34.16
Consensus MFE -31.26
Energy contribution -31.46
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.19
Structure conservation index 0.92
SVM decision value 0.33
SVM RNA-class probability 0.692736
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11955357 102 - 22407834
CCCAUAAAUAUGCAUGUCGUAAAGUCUCUGGAUGGCGUGCUGUCGCAGUUGGCUGAUGAAUGGAGUCUGCUGGCGCCACC----------GGGAACAGCAGAACUAUCAAAC
.((((......(((((((((..((...))..)))))))))..((((((....))).)))))))(((((((((...((...----------.))..)))))).)))....... ( -33.90)
>DroSec_CAF1 174700 102 - 1
CCCAUAAAUAUGCAUGUAGUAAAGUCUCUGGAUGGCGUGCUGUCGCAGUUGGCUGAUGAAUGGAGUCUGCUGGCGCCACC----------GGGAACAGCAGAACUAUCAAAC
.((((......((((((......(((....))).))))))..((((((....))).)))))))(((((((((...((...----------.))..)))))).)))....... ( -30.00)
>DroSim_CAF1 141130 102 - 1
CCCAUAAAUAUGCAUGUCGUAAAGUCUCUGGAUGGCGUGCUGUCGCAGUUGGCUGAUGAAUGGAGUCUGCUGGCGCCACC----------GGGAACAGCAGAACUAUCAAAC
.((((......(((((((((..((...))..)))))))))..((((((....))).)))))))(((((((((...((...----------.))..)))))).)))....... ( -33.90)
>DroEre_CAF1 149564 112 - 1
CCCAUAAAUAUGCAUGUCGUAAAGUCACUCGAUGGCGUGCUGUCGCAGUUGGCUGAUGAAUGGAGUCUGCUGGCGCCACCGGGAGCCACCGGGAGCAGCAGAACUAUCAAAC
.((((......(((((((((..((...))..)))))))))..((((((....))).)))))))(((((((((.(....((((......))))..))))))).)))....... ( -39.10)
>DroYak_CAF1 145252 102 - 1
CCCAUAAAUAUGCAUGUCGUAUAGUCACUGGAUGGCGUGCUGUCGCAGUUGGCUGAUGAAUGGAGUCUGCUGGCGCCACC----------GGGAACAGCAGAACUAUCAAAC
.((((......(((((((((.(((...))).)))))))))..((((((....))).)))))))(((((((((...((...----------.))..)))))).)))....... ( -33.90)
>consensus
CCCAUAAAUAUGCAUGUCGUAAAGUCUCUGGAUGGCGUGCUGUCGCAGUUGGCUGAUGAAUGGAGUCUGCUGGCGCCACC__________GGGAACAGCAGAACUAUCAAAC
.((((......(((((((((..((...))..)))))))))..((((((....))).)))))))(((((((((...((..............))..)))))).)))....... (-31.26 = -31.46 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:50 2006