Locus 4151

Sequence ID 2L_DroMel_CAF1
Location 11,951,777 – 11,951,878
Length 101
Max. P 0.553385
window6545

overview

Window 5

Location 11,951,777 – 11,951,878
Length 101
Sequences 5
Columns 101
Reading direction reverse
Mean pairwise identity 89.26
Mean single sequence MFE -21.06
Consensus MFE -16.28
Energy contribution -16.76
Covariance contribution 0.48
Combinations/Pair 1.08
Mean z-score -1.48
Structure conservation index 0.77
SVM decision value 0.04
SVM RNA-class probability 0.553385
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11951777 101 - 22407834
CUGCAACAAAGUUGCAUAUUUUUCGUAUUAUAAAUAAUGAUAUUGUUAAUGCAAUCUGCAUUCCAUUGGUUCAUUAUAUUAGUUACGGAAGUGCAUACAUA
.((((((...))))))...((((((((...((((((((((.......(((((.....)))))........))))))).)))..)))))))).......... ( -21.56)
>DroSec_CAF1 171140 101 - 1
CUGCAACAAAGUUGCUUAUUUUUCGUGUUAUAAAUAAUGAUAUUGUUAAUGCGAUCUGCAUUCCAUUCGUUCAUUAUAUUAGUUACGGAAGUGCAUACAUA
..(((((...)))))....((((((((...((((((((((.......(((((.....)))))........))))))).)))..)))))))).......... ( -19.46)
>DroSim_CAF1 137570 101 - 1
CUGCAACAAAGUUGCAUAUUUUUCGUGUUAUAAAUAAUGAUAUUGUUAAUGCGAUCUGCAUUCCAUUCGUUCAUUAUAUUAGUUACGGAAGUGCAUACAUA
.((((((...))))))...((((((((...((((((((((.......(((((.....)))))........))))))).)))..)))))))).......... ( -20.56)
>DroEre_CAF1 145960 96 - 1
CUCCAACAAAGUUGCAUAUUUUUCGUGUUAUAUAUAAUCAUAUUGCUAAUGCGAUCUGCAUUCCAUCGGCGCAUUGUUUUAGUUACGGAAGUGCAU-----
............(((((...(((((((..((((......)))).(((((.(((((.(((.........))).))))).))))))))))))))))).----- ( -17.60)
>DroYak_CAF1 141486 97 - 1
CUGCAACAAAGUUGCAUAUGUUUCGUGUUAUGUAUAAUGAUAUUGUUAAUGCGAUCGGCAUUCCAAUGGCACAUUAUAUUAGUUACGGAAGUGCAUG----
.((((((...))))))(((((((((((....((((((((.(((((..(((((.....))))).)))))...))))))))....))))))...)))))---- ( -26.10)
>consensus
CUGCAACAAAGUUGCAUAUUUUUCGUGUUAUAAAUAAUGAUAUUGUUAAUGCGAUCUGCAUUCCAUUGGUUCAUUAUAUUAGUUACGGAAGUGCAUACAUA
............(((((...(((((((......(((((((.......(((((.....)))))........)))))))......))))))))))))...... (-16.28 = -16.76 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:48 2006