Locus 4148

Sequence ID 2L_DroMel_CAF1
Location 11,950,208 – 11,950,299
Length 91
Max. P 0.534582
window6540

overview

Window 0

Location 11,950,208 – 11,950,299
Length 91
Sequences 6
Columns 105
Reading direction forward
Mean pairwise identity 76.20
Mean single sequence MFE -26.63
Consensus MFE -15.55
Energy contribution -15.63
Covariance contribution 0.09
Combinations/Pair 1.33
Mean z-score -1.43
Structure conservation index 0.58
SVM decision value 0.00
SVM RNA-class probability 0.534582
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11950208 91 + 22407834
AUCUA---------UGCCUGGCAUACAAAAUGCAUCUAAUUUUGGGCCUAACGACAACU-UGUCGCUUGUCAUGGCCU--CCUGGCCCGAGUCGCGUUGCUGC--
...((---------(((...)))))......(((......((((((((....(((....-.)))(((......)))..--...))))))))......)))...-- ( -24.30)
>DroVir_CAF1 154579 99 + 1
CUGUCUCUUUCGCAUG-CCGGCAUGU-AAAUGCCUCUAAUUUUGGACCUAACGACAACUUUGUCGUUUGUCAUGGCACAUGGAUGUCUU--UGGCAUUGUUGU--
...............(-(((((((..-..)))))..........(((..(((((((....))))))).)))..)))(((..(((((...--..)))))..)))-- ( -29.00)
>DroSec_CAF1 169472 91 + 1
AUCCA---------UGCCUGGCAUACAAAAUGCAUCUAAUUUUGGGCCUAACGACAACU-UGUCGCUUGUCAUGGCCU--CCUGGCCCGAGUCGCGUUGCUGC--
....(---------(((...((((.....)))).......((((((((....(((....-.)))(((......)))..--...))))))))..))))......-- ( -24.10)
>DroEre_CAF1 144153 93 + 1
AUCUA---------UGCCUGGCAUACAAAAUGCAUCUAAUUUUGGGCCUAACGACAACU-UGUCGCUUGUCAUGGCCU--CCUGGCCCGAGUCGCGUUGUUGUAG
.....---------.....(((...((((((.......)))))).)))..((((((((.-.((.(((((....((((.--...))))))))).)))))))))).. ( -29.70)
>DroYak_CAF1 139762 91 + 1
AUCUA---------UGCCUGGCAUACAAAAUGCAUCUAAUUUUGGGCCUAACGACAACU-UGUCGCUUGUCAUGGCCU--CCUGGCCCGAGUCGCGUUGUUGU--
.....---------.....(((...((((((.......)))))).)))..((((((((.-.((.(((((....((((.--...))))))))).))))))))))-- ( -29.00)
>DroMoj_CAF1 162717 97 + 1
CUUUGUCUCUCGCUAG-CCGGCAUGU-AAAUGCCUCUAAUUUUGGGAAGAACGACAACU-UGUCUUUUGUCAUGGCCCAUGGAUGUCU---UGGCUUUGUAAU--
...........((.((-(((((((..-..)))))((((....((((......(((((..-......)))))....)))))))).....---.))))..))...-- ( -23.70)
>consensus
AUCUA_________UGCCUGGCAUACAAAAUGCAUCUAAUUUUGGGCCUAACGACAACU_UGUCGCUUGUCAUGGCCU__CCUGGCCCGAGUCGCGUUGUUGU__
..............(((...((((.....))))........(((((((....((((....))))(((......))).......)))))))...)))......... (-15.55 = -15.63 +   0.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:42 2006