Locus 4145

Sequence ID 2L_DroMel_CAF1
Location 11,944,074 – 11,944,165
Length 91
Max. P 0.516897
window6537

overview

Window 7

Location 11,944,074 – 11,944,165
Length 91
Sequences 6
Columns 107
Reading direction forward
Mean pairwise identity 81.72
Mean single sequence MFE -35.57
Consensus MFE -19.73
Energy contribution -20.90
Covariance contribution 1.17
Combinations/Pair 1.27
Mean z-score -2.09
Structure conservation index 0.55
SVM decision value -0.03
SVM RNA-class probability 0.516897
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11944074 91 + 22407834
GUCUGGUUCUGGCGAUGGCCCUUUUAUGCC--------------CUGU-CGUUAUAAAAUGGCCAGUGGGCGUUGGUGGUGGCAUCAGUUCGCCAUCGG-CAGCAAA
........(((.(((((((......(((((--------------(.((-((((....))))))....))))))(((((....)))))....))))))).-))).... ( -34.00)
>DroGri_CAF1 146040 107 + 1
GGCUGGUUCUUGCGAUGGCCCUUUUGGGCCAAGUACCAACUGUCCAGCUAUGUAUAAAAUAGUCGAUGGCUGUUGGGGUAAGCAUCAGUAGCACAACGUGCCACAAU
.((((((.(((((..((((((....))))))....(((((.(.((((((((.......)))))...)))).))))).))))).)))))).((((...))))...... ( -41.30)
>DroSec_CAF1 163358 91 + 1
GUCUGGUUCUGGCGAUGGCCCUUUUAUGCC--------------CUGU-CGUUAUAAAAUGGCCAGUGGGCGUUGGUGUUGGCAUCAGUUCGCCAUCGG-CAGCAAA
........(((.(((((((......(((((--------------(.((-((((....))))))....))))))(((((....)))))....))))))).-))).... ( -34.80)
>DroSim_CAF1 129841 91 + 1
GUCUGGUUCUGGCGAUGGCCCUUUUAUGCC--------------CUGU-CGUUAUAAAAUGGCCAGUGGGCGUUGGUGGUGGCAUCAGUUCGCCAUCGG-CAGCAAA
........(((.(((((((......(((((--------------(.((-((((....))))))....))))))(((((....)))))....))))))).-))).... ( -34.00)
>DroEre_CAF1 137927 89 + 1
GUCUGGUUCUGGCGAUGGCCCUUUU--GCC--------------CUGC-CAUUAUAAAAUGGCCAGUGGGCGUUGGAGGUGGCAUCAGUUCGCCAACGG-CAGCAAG
(.(((.(..((((((..((((((((--(((--------------(.((-((((....))))))....)))))...)))).)))......))))))..).-))))... ( -34.80)
>DroYak_CAF1 133589 90 + 1
GUCAGGUUCUGGCGAUGGCCCUUUU-UCCC--------------CUGC-CAUUAUAAAAUGGCCAGUGGGCGUUGGUGGUGGCAUCAGUUCGCCAUCGG-CAGCAAA
........(((.(((((((......-.(((--------------((((-((((....))))).))).)))..((((((....))))))...))))))).-))).... ( -34.50)
>consensus
GUCUGGUUCUGGCGAUGGCCCUUUUAUGCC______________CUGC_CGUUAUAAAAUGGCCAGUGGGCGUUGGUGGUGGCAUCAGUUCGCCAUCGG_CAGCAAA
((((....(((((...(((........)))...................((((....))))))))).))))((((..((((((........))))))...))))... (-19.73 = -20.90 +   1.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:39 2006