Locus 4140

Sequence ID 2L_DroMel_CAF1
Location 11,921,386 – 11,921,492
Length 106
Max. P 0.992465
window6531

overview

Window 1

Location 11,921,386 – 11,921,492
Length 106
Sequences 4
Columns 106
Reading direction forward
Mean pairwise identity 82.08
Mean single sequence MFE -24.75
Consensus MFE -15.49
Energy contribution -19.68
Covariance contribution 4.19
Combinations/Pair 1.07
Mean z-score -3.26
Structure conservation index 0.63
SVM decision value 2.33
SVM RNA-class probability 0.992465
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11921386 106 + 22407834
AAUAACUGUUUCGAACAAAUGCAAUGUUUACCAAGUUCAUGGGACUAAAAAUAAGUGCAUGGUAUUUGUUUAAAUGCCAUGCAUUUACCUCAAUGACAUUUGCAUA
..................((((((((((.....((((.....)))).....((((((((((((((((....)))))))))))))))).......)))).)))))). ( -30.00)
>DroSec_CAF1 140764 106 + 1
AAUAAUAGUUUCGAACAAAUGCAAUGUUUACCAAGUUCAUGGGACUUAAAAUAAGUGUAUGGUAUUUGUUUAAAUGCCAUGCAUUUACCUUAAUGACAUUUGCAUA
..................((((((((((....(((((.....)))))....((((((((((((((((....)))))))))))))))).......)))).)))))). ( -28.90)
>DroSim_CAF1 107282 106 + 1
AAUAAUAGUUUCGAACGAAUGCAAUGUUUACCAAGUUCAUGGGACUAAAAAUAAGUCCAUGGUAUUUUUUUAAAUGCCAUGCAUUUACCUUAAUGACAUUUGCAUA
..................((((((((((......((..((((((((.......)))))(((((((((....))))))))).)))..))......)))).)))))). ( -25.60)
>DroYak_CAF1 110041 85 + 1
AAUU--CGUUUUGAACAAAUGCAAUUUUUACCUAGUUCAUGGAACACAA-------------------UUUCAUUGCCAUGCAUUUACCUUAAUGGCAUUUGCAUA
....--............((((((..........((((...))))....-------------------......((((((............)))))).)))))). ( -14.50)
>consensus
AAUAAUAGUUUCGAACAAAUGCAAUGUUUACCAAGUUCAUGGGACUAAAAAUAAGUGCAUGGUAUUUGUUUAAAUGCCAUGCAUUUACCUUAAUGACAUUUGCAUA
..................((((((((((..((........)).........((((((((((((((((....)))))))))))))))).......)))).)))))). (-15.49 = -19.68 +   4.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:33 2006