Locus 414

Sequence ID 2L_DroMel_CAF1
Location 1,235,442 – 1,235,562
Length 120
Max. P 0.722405
window669

overview

Window 9

Location 1,235,442 – 1,235,562
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 96.94
Mean single sequence MFE -30.65
Consensus MFE -27.84
Energy contribution -28.27
Covariance contribution 0.44
Combinations/Pair 1.07
Mean z-score -1.83
Structure conservation index 0.91
SVM decision value 0.40
SVM RNA-class probability 0.722405
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1235442 120 - 22407834
AACUAAAAAUAAAUGUUGCUCGAACGCAUGGCCACAGAAAUUAUUGCGGUUUCCAUCGAACUACAGAGGGAAAGUCCUUGCCAAAGGACAUUAAACAUUGAUGCCAGCCUUGGCCAAAUA
................(((......)))(((((((((......))).((((..((((((.((....)).....((((((....))))))........))))))..)))).)))))).... ( -28.00)
>DroSec_CAF1 12772 120 - 1
GACUAAAAAUAAAUGUUGCUCGAACGCAUGGCCACAGAAAUUAUUGCGGUUUCCAUCGAACUGCAGAGGAAAAGUCCUUGCCAAAGGACAUUAAACAUUGAUGCCAGCCUUGGCCAAAUA
................(((......)))(((((...........((((((((.....))))))))((((....((((((....))))))........(((....)))))))))))).... ( -31.40)
>DroSim_CAF1 8555 120 - 1
GACUAAAAAUAAAUGUUGCUCGAACGCAUGGCCACAGAAAUUAUUGCGGUUUCCAUCGAACUGCAGAGGGAAAGUCCUUGCCAAAGGACAUUAAACAUUGAUGCCAGCCUUGGCCAAAUA
................(((......)))(((((...........((((((((.....))))))))((((....((((((....))))))........(((....)))))))))))).... ( -31.60)
>DroYak_CAF1 8858 120 - 1
AACUAAAAAUAAAUGUUGCUCGAACGCAUGGCCACAGAAAUUAUUGUGGUUUCCAUCGAACAGCCGGGGGAAAGUCCUUGCCAAAGGACAUUAAACAUUGAUGCCAGCCUUGGCCAAAUA
................((.((((......((((((((......))))))))....)))).))(((((((....((((((....))))))........(((....))))))))))...... ( -31.60)
>consensus
AACUAAAAAUAAAUGUUGCUCGAACGCAUGGCCACAGAAAUUAUUGCGGUUUCCAUCGAACUGCAGAGGGAAAGUCCUUGCCAAAGGACAUUAAACAUUGAUGCCAGCCUUGGCCAAAUA
................(((......)))(((((...........((((((((.....))))))))((((....((((((....))))))........(((....)))))))))))).... (-27.84 = -28.27 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:34 2006