Locus 4137

Sequence ID 2L_DroMel_CAF1
Location 11,915,550 – 11,915,641
Length 91
Max. P 0.550387
window6528

overview

Window 8

Location 11,915,550 – 11,915,641
Length 91
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 84.36
Mean single sequence MFE -32.85
Consensus MFE -23.68
Energy contribution -24.52
Covariance contribution 0.84
Combinations/Pair 1.16
Mean z-score -1.99
Structure conservation index 0.72
SVM decision value 0.03
SVM RNA-class probability 0.550387
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11915550 91 - 22407834
CCAG---GUAAAGUGGAGUGCCUCCGA--GAAGGUGCCCUCUUCAAAGGGAAGGAAUCCCACACGUCCACA-GUGGCUUGAAAGAGUGUUGGUGGUG-
....---...(((.((.(..(((....--..)))..))).)))....((((.....))))......((((.-...((((....))))....))))..- ( -26.20)
>DroSec_CAF1 134908 91 - 1
CCAG---GUAAAGUGGAGUGCCUCCGA--GAGGGUGCCCUCUUCAAAGGGAAGGAAUUCCACACGUCCACA-GUGGCUCGAAAGAGUGUUAGUGGUG-
....---.....(((((((.(((((((--((((....)))))).....)).))).)))))))....((((.-...((((....))))....))))..- ( -36.00)
>DroSim_CAF1 101429 91 - 1
CCAG---GUAAAGUGGAGUGCCUCCGA--GAGGGUGCCCUCUUCAAAGGGAAGGAAUUCCACACGUCCACA-GUGGCUCGAUAGAGUGUUGGUGGUG-
....---.....(((((((.(((((((--((((....)))))).....)).))).)))))))....((((.-...((((....))))....))))..- ( -34.10)
>DroEre_CAF1 106225 92 - 1
CCAG---GAAAAGUGGAGUGCCUCCGA--GAGGGUGCCCUCUUCAAAGGGAAGGAAUUCCACACGUCCACA-GUGGCUCGCAAGAGUGCUGGUGGUGU
((((---((...(((((((.(((((((--((((....)))))).....)).))).)))))))...))).((-(((.(((....)))))))).)))... ( -41.10)
>DroYak_CAF1 103870 92 - 1
CCCG---GAAAAGUGGAGUGCCUCCGA--GAGGGCGCCCUCUUCAAAGGAAAGGAAUUCCACACGUCCACA-GUGGCUCGAAGGAGUGGUGGUGGUGU
....---.....(((((((.(((((((--((((....))))))....)))..)).)))))))(((.((((.-.(.((((....)))).)..))))))) ( -38.10)
>DroAna_CAF1 117177 98 - 1
AAAAAAAAAAAAGUAGGAUGAAUCCAAAGGAGAGUGCCCUCUUCAGCGGCAAGGAAUUCCACACGUCCACAUGUGGCAGAAAGGAGUGCAAGUGUACA
......................(((...((((((....)))))).((.....((....)).(((((....))))))).....)))((((....)))). ( -21.60)
>consensus
CCAG___GAAAAGUGGAGUGCCUCCGA__GAGGGUGCCCUCUUCAAAGGGAAGGAAUUCCACACGUCCACA_GUGGCUCGAAAGAGUGUUGGUGGUG_
............(((((((.(((((....(((((....)))))....))..))).)))))))....((((.....((((....))))....))))... (-23.68 = -24.52 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:28 2006