Locus 4136

Sequence ID 2L_DroMel_CAF1
Location 11,910,793 – 11,910,888
Length 95
Max. P 0.688898
window6527

overview

Window 7

Location 11,910,793 – 11,910,888
Length 95
Sequences 6
Columns 96
Reading direction reverse
Mean pairwise identity 81.61
Mean single sequence MFE -21.52
Consensus MFE -12.95
Energy contribution -14.07
Covariance contribution 1.11
Combinations/Pair 1.06
Mean z-score -2.14
Structure conservation index 0.60
SVM decision value 0.32
SVM RNA-class probability 0.688898
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11910793 95 - 22407834
CAUUGC-CAUUUAAGCCUACCAGAUGGUUUUAAACGGCUUAUUGUAUUGGCCCGCAUUCUUUUCUCUUCAUUAUUGGCUGUCACUAAUGACAGCUU
....((-((..((((((.(((....))).......))))))......))))........................((((((((....)))))))). ( -23.40)
>DroPse_CAF1 99986 83 - 1
CAUGUCCUGUUUCUGCCGGCGAAAGGGUUUUAAAUA----------AUUAGCUGCUUCC---CCACUUCAUUAUCGCCUGUCAUUAUUGACAGCUU
..............((.((((((((((.........----------.............---)).))).....)))))(((((....))))))).. ( -13.15)
>DroSec_CAF1 130211 95 - 1
CAUUGC-CAUUUAAGCCUACCAGAUGGUUUUAAACGGCUUAUUGUAUUGGCCCGCAUUCUUUUCUCUUUAUUAUUGGCUGUCACUACUGACAGCAU
....((-((..((((((.(((....))).......))))))......)))).........................(((((((....))))))).. ( -23.30)
>DroSim_CAF1 96338 95 - 1
CAUUGC-CAUUUAAGCCUACCAGAUGGUUUUAAACGGCUUAUUGUAUUGGCCCGCAUUCUUUUCUCUUUAUUAUUGGCUGUCACUACUGACAGCUU
....((-((..((((((.(((....))).......))))))......))))........................((((((((....)))))))). ( -23.50)
>DroEre_CAF1 101600 95 - 1
CAUUCG-CAUUUAAGCCUGCCAGAUGGUUUUCAAAGGCUUAUAGUAUGGGCCCGCAUUCUUUUCUCUUUAUUAUUGGCUGUCACUACUGACAGCUU
.....(-(....(((((........))))).....(((((((...))))))).))....................((((((((....)))))))). ( -23.30)
>DroYak_CAF1 98960 95 - 1
CAUUGC-CAUUUAAGCCCACCAGAUGGUUUUAAAAGGCUUAUUGUAUUGGGCUGCCUUCUUUUCUCUUUAUUAUUGGCUGUCACUACUGACAGCUU
......-......((((((...((((((((....)))).))))....))))))......................((((((((....)))))))). ( -22.50)
>consensus
CAUUGC_CAUUUAAGCCUACCAGAUGGUUUUAAACGGCUUAUUGUAUUGGCCCGCAUUCUUUUCUCUUUAUUAUUGGCUGUCACUACUGACAGCUU
...........((((((.(((....))).......))))))...................................(((((((....))))))).. (-12.95 = -14.07 +   1.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:27 2006