Locus 4135

Sequence ID 2L_DroMel_CAF1
Location 11,905,942 – 11,906,032
Length 90
Max. P 0.500000
window6526

overview

Window 6

Location 11,905,942 – 11,906,032
Length 90
Sequences 6
Columns 90
Reading direction reverse
Mean pairwise identity 97.78
Mean single sequence MFE -16.62
Consensus MFE -16.36
Energy contribution -16.25
Covariance contribution -0.11
Combinations/Pair 1.09
Mean z-score -0.61
Structure conservation index 0.98
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11905942 90 - 22407834
CCGCCCUGUGGGCGUGAGCGAAAUGAUGAGACAAAUGAAUGAGAAUUUAAUAGUAAAGGCAAAUAAAAGCUGAGCAACUCAAGUCAAGGA
((((((...))))..........(((((((.....(((((....)))))...((...(((........)))..))..))))..))).)). ( -16.80)
>DroSec_CAF1 125474 90 - 1
CCGCCCUGUGGGCGUGAGCGAAAUGAUGAGACAAAUGAAUGAGAAUUUAAUAGUAAAGGCAAAUAAAAGCUGAGCAACUCAAGUCAAGGA
((((((...))))..........(((((((.....(((((....)))))...((...(((........)))..))..))))..))).)). ( -16.80)
>DroSim_CAF1 91601 90 - 1
CCGCCCUGUGGGCGUGAGCGAAAUGAUGAGACAAAUGAAUGAGAAUUUAAUAGUAAAGGCAAAUAAAAGCUGAACAACUCAAGUCAAGGA
((((((...))))..........(((((((.....(((((....)))))...((...(((........)))..))..))))..))).)). ( -16.50)
>DroEre_CAF1 96784 90 - 1
CCGCCCUGUGGGCGUGAGCGCAAUGAUGAGACAAAUGAAUGAGAAUUUAAUAGUAAAGGCAAAUAAAAGCUGAGCAACUCAAGUCGAGGA
....(((.((.((....)).))....((((.....(((((....)))))...((...(((........)))..))..)))).....))). ( -18.20)
>DroYak_CAF1 93669 90 - 1
CCGCCCUGUGGGCGUGAGCGAAGUGAUGAGACAAAUGAAUGAGAAUUUAAUAGUAAAGGCAAAUAAAAGCUGAGCAACUCAAGUCAAGGA
((((((...))))..........(((((((.....(((((....)))))...((...(((........)))..))..))))..))).)). ( -16.70)
>DroAna_CAF1 107309 90 - 1
CCGCCCCGUGGGCGUGAGCGAAAUGAUGAGACAAAUGAAUGAGAAUAUAAUAGUAAAGGCAAAUAAAAGCUGAGCAACUCAAGUCAAGGA
((((((...))))..........(((((((.((......))...........((...(((........)))..))..))))..))).)). ( -14.70)
>consensus
CCGCCCUGUGGGCGUGAGCGAAAUGAUGAGACAAAUGAAUGAGAAUUUAAUAGUAAAGGCAAAUAAAAGCUGAGCAACUCAAGUCAAGGA
((((((...))))..........(((((((.....(((((....)))))...((...(((........)))..))..))))..))).)). (-16.36 = -16.25 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:26 2006