| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 11,861,171 – 11,861,264 |
| Length | 93 |
| Max. P | 0.550928 |
| Location | 11,861,171 – 11,861,264 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 81.21 |
| Mean single sequence MFE | -26.87 |
| Consensus MFE | -20.33 |
| Energy contribution | -20.00 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.20 |
| Structure conservation index | 0.76 |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.550928 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11861171 93 + 22407834 UGAUGCCACAGGGCGUCCACUUGAC-----------UGAGUGGUGGAGAAUCGAGAGGCAAAUGUCAGGAGCAGCUGACAGGACUUACAUAAGC----AGGCCCAAAA ..........((((.((((((....-----------.....)))))).....(.(((.(...((((((......)))))).).))).)......----..)))).... ( -25.60) >DroSec_CAF1 84372 93 + 1 CGAUGCCACAGGGCGUCCACUUGAA-----------UGAGUGGUGCAGAAUCGAGAGGCAAAUGUCAGGAGCAGCUGACAGGACUUACAUAAGC----AGGCCCAAAA (((((((....)))((((((((...-----------.)))))).))...)))).(.(((...((((((......)))))).(.(((....))))----..)))).... ( -27.30) >DroSim_CAF1 49698 93 + 1 CGAUGCCACAGGGCGUCCACUUGAA-----------UGAGUGGUGCAGAAUCGAGAGGCAAAUGUCAGGAGCAGCUGACAGGACUUACAUAAGC----AGGACCAAAA (((((((....)))((((((((...-----------.)))))).))...)))).........((((((......))))))((.(((.(....).----))).)).... ( -24.80) >DroEre_CAF1 54949 93 + 1 GGCUGCCACAGGGCGUCCACUCGAA-----------UGAGUGGUGCAAAAUCGAGAGGCAAAUGUCAGGAGCAGCUGACAGGACUUACAUAAUC----AGGCCCAAAA (((((((....)))((((.(((((.-----------(..(.....)..).))))).......((((((......))))))))))..........----.))))..... ( -28.70) >DroYak_CAF1 50980 92 + 1 -GCUGCCACAGGGCGUCCACUUGAA-----------UGAGUGGUGCAAAAUCGAGAGGCAAAUGUCAGGAGCAGCUGACAGGACUUACAUAAUC----AGGCCUAAAG -(((((..(...(((.((((((...-----------.)))))))))..........(((....))).)..)))))....(((.(((........----)))))).... ( -26.50) >DroAna_CAF1 57826 100 + 1 --------UGGGUUGUCCCCUCGAUGAUAUUACCGUCGAGUGGCGCAAAAUCGAGAGGAAAAUGUCAGAAGCAGCUGACAAAGCUUAUAUAAUCUCCCAGGCUUUGCU --------((((((((.(((((((((.......))))))).)).)))).......(((....((((((......))))))...))).........))))......... ( -28.30) >consensus _GAUGCCACAGGGCGUCCACUUGAA___________UGAGUGGUGCAAAAUCGAGAGGCAAAUGUCAGGAGCAGCUGACAGGACUUACAUAAGC____AGGCCCAAAA ..........(((((((((((((.............))))))).))......(.(((.....((((((......))))))...))).)............)))).... (-20.33 = -20.00 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:18 2006